PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g001980.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 387aa MW: 43600.5 Da PI: 9.8088

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g001980.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.6	3.4e-14	97	141	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Csa02g001980.1 97 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 141 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-16	91	147	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.6	92	146	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-7	94	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-17	95	144	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-11	96	144	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-12	97	141	IPR001005	SANT/Myb domain
CDD	cd00167	5.79E-9	99	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
QIFCETQKSC TKFFILSQSE SETQSESRFR RSSMVSVNPR PKGFPYFDPV DMSLPSSSSD 60 GFGSTPVTGR TNNNNTVSFS EDPTTKIRKP YTIKKSRENW TEQEHDKFLE ALHLFDRDWK 120 KIEAFVGSKT VVQIRSHAQK YFLKVQKSGA NEHLPPPRPK RKATHPYPQK APKNNVAAAF 180 TSQVIGPGYL YTSDSQSLLG NQAVCASTSS SWNHEPTTTN LPKPVIQEEQ GVSATALPKN 240 ICSKEDTTRR KVQVLTKPSE ESCEKPHRVM PDFAEVYSFI GSVFDPNISG HLQRLKQMDP 300 INMETVLLLM RNLSVNLTSP EFAEQIGKNS NVPYVRARDI HPRLFVHSLD PGPRVLTTQA 360 RIPRWLLSCG FLCPFSTQQK KCKFSE*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

QIFCETQKSC TKFFILSQSE SETQSESRFR RSSMVSVNPR PKGFPYFDPV DMSLPSSSSD  60
GFGSTPVTGR TNNNNTVSFS EDPTTKIRKP YTIKKSRENW TEQEHDKFLE ALHLFDRDWK  120
KIEAFVGSKT VVQIRSHAQK YFLKVQKSGA NEHLPPPRPK RKATHPYPQK APKNNVAAAF  180
TSQVIGPGYL YTSDSQSLLG NQAVCASTSS SWNHEPTTTN LPKPVIQEEQ GVSATALPKN  240
ICSKEDTTRR KVQVLTKPSE ESCEKPHRVM PDFAEVYSFI GSVFDPNISG HLQRLKQMDP  300
INMETVLLLM RNLSVNLTSP EFAEQIGKNS NVPYVRARDI HPRLFVHSLD PGPRVLTTQA  360
RIPRWLLSCG FLCPFSTQQK KCKFSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g001980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010427589.1	0.0	PREDICTED: protein REVEILLE 5-like isoform X2
Swissprot	C0SVG5	1e-168	RVE5_ARATH; Protein REVEILLE 5
TrEMBL	R0HBL4	1e-178	R0HBL4_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010427577.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.1	1e-162	MYB_related family protein

Publications ? help Back to Top
Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]