PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g039910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 151aa    MW: 16275 Da    PI: 9.3388
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g039910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.75.1e-0883105426
                     XCHHHCHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKka 26 
                     ++r +r++kNRe+A rsR+RK++
  Csa01g039910.1  83 DRRHKRMIKNRESAARSRARKQE 105
                     799*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.3E-677108No hitNo description
SuperFamilySSF579594.08E-684107No hitNo description
CDDcd147073.45E-1384109No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPLNNQQPPQ PPSSSSIVTA LYGSPLPLPP PATVLSLNSG VGFKFLDNTD SLVASNPNSF  60
EESASFGCFA KKRGQFSDES RGDRRHKRMI KNRESAARSR ARKQELENGG SNSTPSEQNT  120
STVLDSSILR NIYKSFLSPC GEVCSHGRSE *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g039910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467572.15e-67PREDICTED: bZIP transcription factor 27-like
SwissprotQ7PCC64e-47FDP_ARATH; bZIP transcription factor 27
TrEMBLR0GAE86e-51R0GAE8_9BRAS; Uncharacterized protein
STRINGXP_010467572.12e-66(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.14e-49basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]