PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g015240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 447aa    MW: 49281.1 Da    PI: 6.7867
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g015240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.52.2e-31237291155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr+rWtpeLHe+Fv+ v +L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  Csa01g015240.1 237 KPRMRWTPELHESFVKSVIKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 291
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-29235292IPR009057Homeodomain-like
SuperFamilySSF466896.45E-16236291IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-23237292IPR006447Myb domain, plants
PfamPF002491.0E-7239290IPR001005SANT/Myb domain
PfamPF143795.2E-21328374IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MNRHSLVSTA PNECNKGVGQ ACLSSLPPVH NFLNVQPETR KSPFIRSQSP DSPGQLWSKN  60
TSQSTFSRSS TFCTNLYLSS SSTSETQKHL GNSLPFLPDP SSYSHSASGV ESARSPSVFT  120
EDLGNPYGGG DNSGSLVKDF LNLSGDACSD GGFHDFGCSN DSYCLSDQME LQFLSDELEL  180
AITDRAETPR LDEIYETPLA SSNPVTRLSP SQSCVAGAVS IDVVSSHPSP GSAANHKPRM  240
RWTPELHESF VKSVIKLEGP EKATPKAVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE  300
EKKNENSEER KLALSNSEAD EKKKGAIQLI EALRMQMEVQ KQLHEQLEVQ RVLQLRIEEH  360
AKYLEKMLEE QRKTGRLICS SPSQTVLSPS DDSIPDSQNM SKTEATSPQP SPSKKKKASE  420
TEVNKCESPQ KRPRLENKAD LEGPNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-24237294259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g015240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508890.0AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankAY0966740.0AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499814.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010499823.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010499830.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010499839.10.0PREDICTED: myb family transcription factor PHL6-like
RefseqXP_019101525.10.0PREDICTED: myb family transcription factor PHL6-like
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLD7L0M90.0D7L0M9_ARALL; Uncharacterized protein
STRINGXP_010499814.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]