PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g013360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 332aa    MW: 37027.6 Da    PI: 8.9852
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g013360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.4e-104787545
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                    k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Csa01g013360.1 47 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 87
                    7889************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-83790No hitNo description
SMARTSM003381.8E-643106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384589IPR004827Basic-leucine zipper domain
PfamPF001706.9E-74787IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.0E-74790No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141441.4E-34129204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADTSSRTDV STDGDTDHRD QGSERGQMML AAASDSSDRS KDKLDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGVFISSS GDQAHSTGGN GALAFDAEHS  120
RWLEEKNKQM NELRSALNAH AGDTELRTIV DGVMAHYEEL FRIKSNAAKN DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KLLANQLEPM TERQVMGLNS LQQTSQQAED ALSQGMESLQ  240
QSLADTLSSG TLGSTSSDNV ASYMGQMAMA MGQLGTLEGF IRQADNLRLQ TLQQMLRVLT  300
TRQSARALLA IHDYSYRLRA LSSLWLARPR E*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g013360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498764.10.0PREDICTED: transcription factor TGA6-like isoform X1
RefseqXP_010498771.10.0PREDICTED: transcription factor TGA6-like isoform X1
RefseqXP_010498779.10.0PREDICTED: transcription factor TGA6-like isoform X1
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLM4F1220.0M4F122_BRARP; Uncharacterized protein
STRINGCagra.0430s0055.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-178TGACG motif-binding factor 6