PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g010830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 478aa MW: 54882.1 Da PI: 7.9856 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95 | 7.1e-30 | 91 | 177 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Csa01g010830.1 91 RWPRQETLMLLEVRSRLDHKFKESNQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 177 8*************************************999*****************************98.77888********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.8E-4 | 88 | 151 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.097 | 90 | 149 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 7.0E-20 | 91 | 178 | No hit | No description |
CDD | cd12203 | 2.11E-19 | 91 | 156 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MEDHHQQNHP QYGIAQPSPL HFSSDLFGFN LVSAPDQHHR LHDMTDHEIS FLPRGIQGLT 60 VTGNNSNTIV ASTSSTRGGF SGFTNGGGTG RWPRQETLML LEVRSRLDHK FKESNQKGPL 120 WDEVSRIMSE EHGYTRSGKK CREKFENLYK YYKKTKEGKA GRRQDGKNYR FFRQLEAIYG 180 ESKDSVSCYD NTQFLMTNSL HGFHAPNIHH NAVPHHQKPL SNTQSLSISN NLYSSSVLDL 240 TSSSEGNEST RVKEMNWWKE KIKEYIGIHI ERLIEKQDFW LEKLMKTVED KEHQRMVREE 300 EWKRVEAARI EKELLFWTKE RERMEARDAA VIEALHYLTG KASIRPNSSS PTERINGNIS 360 DQTMADEENK SKMGKKEMKN KKRKETWSSH GGSHSRIKEG MMIYDNQVTR INDCCRDDEQ 420 GHHHEGYSPS NSKDGNPSCG IGMPANTTNC FPMLVGDGDQ NSWEGYGLKL RKEDNPQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g010830.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479725.1 | 0.0 | PREDICTED: trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 1e-128 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | R0I3S2 | 0.0 | R0I3S2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010479725.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2767 | 28 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10000.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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