PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g293750.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 575aa    MW: 58640.9 Da    PI: 7.996
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g293750.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.44e-0694113626
                         -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                         C +f + G C++Gd+Ck++H+
  Cre06.g293750.t1.2  94 CFDFTK-GVCSRGDKCKYSHD 113
                         667888.*************7 PP
2zf-CCCH201.2e-06173194426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++C +f + G C++G+ C+++H+
  Cre06.g293750.t1.2 173 AICYDFVK-GVCQRGAECRYSHD 194
                         58******.*************7 PP
3zf-CCCH23.41.1e-07213234426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C +++r G C++G++Ck++H 
  Cre06.g293750.t1.2 213 EVCYDYLR-GRCNRGATCKYSHN 234
                         78******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-588114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.53588115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-589113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-589113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103122149IPR000571Zinc finger, CCCH-type
SMARTSM003560.28123148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436169196IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4170195IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4173194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558209236IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4210235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5210234IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5213234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4213235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MDQYQLAQLQ QRFQEVNLSG GVDQGAMLKS AGDLLSSAEA TTQYSSSESS SGADNLNQLD  60
SSSLLDTGML ATARQSDGAR STGQPSQEGK AQICFDFTKG VCSRGDKCKY SHDLATIVHF  120
NSKEKGICFD YLRNQCHRGL LCRFSHDLSN IAQQCQVNNG VARGPAQGAK PNAICYDFVK  180
GVCQRGAECR YSHDLSLIAR MARGGSAQPK AGEVCYDYLR GRCNRGATCK YSHNIAFLAA  240
PGFLGNAMSS DGVPMAAQAP GGHMSAGGAP PLGPMPVPGG PGFMGMGGMS GMGPRPLHTA  300
LSADQATLSH VLAAAGPGAV SQMLAAQAAA QQSNGLAAEA ADGRRRSNSL NGDMGNDTLA  360
VNDQPHWNAK GLAMAQHAAI MQRMAGMAAA AGMQQAFGGG MGQGMPGRGM PPGADAMSHL  420
YGKPPPSMGS YGGHDTSAGM RRPPLPPGGG SVPAEFAALL AAGGMADSHA LYAETIKAQL  480
QAQQGARMVP NLSGGGAPPM MAAAPQPIPG RDSQGYDVAA AQYAQQGGSQ SGGGAPSSDS  540
GSLSRSAPSA GAPVNPDLLP MIKEIWSKPG QIAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.167990.0normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre06.g293750.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001701566.10.0hypothetical zinc finger protein
TrEMBLA0A2K3DQK70.0A0A2K3DQK7_CHLRE; Uncharacterized protein
STRINGEDO973240.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314
Representative plantOGRP1013666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.12e-07C3H family protein