PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_41232_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 364aa    MW: 41468 Da    PI: 6.996
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_41232_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-16147198155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Cotton_A_41232_BGI-A2_v1.0 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 198
                                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.21148112IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1054114IPR016177DNA-binding domain
SMARTSM003804.8E-1055118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-955113IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17147208IPR016177DNA-binding domain
CDDcd000181.84E-24147208No hitNo description
PfamPF008475.8E-12147198IPR001471AP2/ERF domain
SMARTSM003801.2E-24148212IPR001471AP2/ERF domain
PROSITE profilePS5103218.334148206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17148207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAKLSQQNHK NTTQNNTSTA SNGVTKVKRT RRSVPRDSPP QLPNFVVIYA EYCFRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQGAYDDEAA AAHAYDLAAL KYWGQDTILN FPLSTYQKEL  120
KEMEDQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA  180
TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKWLKPNQTK PENNPNPNPN IIDTTTTSLV  240
TPNPDQELDL TFFNGNNHNQ KLQESDVISE TLLTQPRPVN ATSALGLLLQ SSKFKEMMEM  300
TSAATDHRQS TSMISEPVRC GFPEDIQTYF ECQDSSCYGN GDDLIFGELN SFGPSMFQCD  360
QLDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614765.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-104AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2V3Q80.0A0A0D2V3Q8_GOSRA; Uncharacterized protein
STRINGGorai.012G098200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-87ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]