PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40524_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 354aa    MW: 39890.5 Da    PI: 7.3276
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40524_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001277299123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 + C +Cgk F  + + ++H +++
  Cotton_A_40524_BGI-A2_v1.0 277 FMCRKCGKAFAVRGDWRTHEKNC 299
                                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.58193215IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64193220IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-6193212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-6259297No hitNo description
Gene3DG3DSA:3.30.160.609.4E-6264297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549277297IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MADYPYTNFF SGWFKFNPVQ HYPSPNPPPP PPPHPLQQPN SFTHDFYSNS RNDRSSHINP  60
FFHYQTSFSS SSPPSSPVRE ALPLLSLSPT RQNNEDQDQD QCSWTTAMDE GRRLLFTNTT  120
VAEAEDETVT VALHIGLPSP SASELASVLS SSSEITDKDG DGDDSSGCAV NRLNKGQYWI  180
PTPSQILIGP TQFSCPVCCK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY  240
CCAPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG  300
KLWYCICGSD FKHKRSLKDH IKAFGNGHAA YGIDGMEEDD EPASEVEQDN DSMQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017620847.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-148ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1U8NWV10.0A0A1U8NWV1_GOSHI; zinc finger protein WIP2-like isoform X1
STRINGGorai.003G089200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-133C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]