PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_40094_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 319aa MW: 35391.9 Da PI: 8.9411

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_40094_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.4	2.5e-11	57	101	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + + +t q++s+ qky Cotton_A_40094_BGI-A2_v1.0 57 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIS-SKTVIQIRSHAQKY 101 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-15	51	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.033	52	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-6	54	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-18	55	104	IPR006447	Myb domain, plants
SMART	SM00717	7.5E-9	56	104	IPR001005	SANT/Myb domain
Pfam	PF00249	7.7E-9	57	101	IPR001005	SANT/Myb domain
CDD	cd00167	7.94E-7	59	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MVSKNPNSAD GFYLDPTGMA LPDLGPFANT ATAASTVSSL EDSNKKIRKP YTITKSRESW 60 TEPEHDKFLE ALQLFDRDWK KIEAFISSKT VIQIRSHAQK YFLKVQKNGT NEHLPPPRPK 120 RKATHPYPQK ASKTAHGHPQ VSGSFPSSTA LLDAGYALST DPSPMLMDPI TSAALSSWTS 180 SAKPISFSQE KNGLRLTNNS CSSSEDTLKT RQIEEITDQR NNGHALRVLP DFAQVYSFIG 240 SVFDPKATGH LQKLKKMDPL DVETVLLLMR NLAINLASPD FEDHRRLLSS YDVEMDTSDG 300 SACKAVDKEQ SKSITYNSR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017628116.1	0.0	PREDICTED: protein REVEILLE 6-like isoform X1
Swissprot	Q8H0W3	1e-127	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A1U8N201	0.0	A0A1U8N201_GOSHI; protein REVEILLE 6-like isoform X1
STRING	EOY23325	1e-180	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	1e-121	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]