PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_38864_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 367aa MW: 40347.7 Da PI: 7.5535

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_38864_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.3e-32	200	255	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Cotton_A_38864_BGI-A2_v1.0 200 KQRRCWSSELHKRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 255 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.248	197	257	IPR017930	Myb domain
SuperFamily	SSF46689	3.98E-18	198	258	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-28	198	258	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-27	200	255	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-7	202	253	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MDYAQKMRKC HEYVEALEEE RRKIQVFQRE LPLCFELVTQ AIESCKKEMY MQGQSECSEQ 60 TSSDSPVLEE FIPIKRSCNC SEEDDDDDDE NVAAADKKKS DWLRSVQLWN PPSKEDVGKT 120 GSGVQMKGNG GAFQPFHKEK GNVEKKSVEA VGKGNASATA TTTTSASTTE SGSRGIAADD 180 GNTNKKVEKG QQQQQPPQRK QRRCWSSELH KRFLHALQQL GGSHVATPKQ IRELMKVDGL 240 TNDEVKSHLQ KYRLHTRRPS PSINSNGNNP QTPQFVVVGG IWVPPQEYAS VATTAVVSGE 300 TSVTPSPNSG VYAPVAVPLP TLAKPSVQRL QRSQSEDRGS HSEGRVHSNS PSTSSSTHTT 360 TDGFSAF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MDYAQKMRKC HEYVEALEEE RRKIQVFQRE LPLCFELVTQ AIESCKKEMY MQGQSECSEQ  60
TSSDSPVLEE FIPIKRSCNC SEEDDDDDDE NVAAADKKKS DWLRSVQLWN PPSKEDVGKT  120
GSGVQMKGNG GAFQPFHKEK GNVEKKSVEA VGKGNASATA TTTTSASTTE SGSRGIAADD  180
GNTNKKVEKG QQQQQPPQRK QRRCWSSELH KRFLHALQQL GGSHVATPKQ IRELMKVDGL  240
TNDEVKSHLQ KYRLHTRRPS PSINSNGNNP QTPQFVVVGG IWVPPQEYAS VATTAVVSGE  300
TSVTPSPNSG VYAPVAVPLP TLAKPSVQRL QRSQSEDRGS HSEGRVHSNS PSTSSSTHTT  360
TDGFSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618387.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	Q9FPE8	1e-103	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A1U8IEU6	0.0	A0A1U8IEU6_GOSHI; transcription factor LUX-like
STRING	Gorai.013G080200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	2e-86	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]