PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_36719_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 418aa MW: 45737 Da PI: 8.6473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 66 | 115 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Cotton_A_36719_BGI-A2_v1.0 66 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 115 59*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-29 | 66 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-32 | 66 | 131 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-11 | 66 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-21 | 66 | 123 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.60E-29 | 66 | 122 | No hit | No description |
PROSITE profile | PS51032 | 22.049 | 66 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MEEAFRRLKG VVNVTDLDPR DATTYRKKSA VSTTTSATST TTTSTTPTTT NKRSLKENGG 60 TGGTMRYRGV RRRPWGRYAA EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGIKART 120 NFVYPVTEPH SASDHLLPQF SFSRQSQLNR KHHHFGHSSK WPPFANSQVG DFSLGSGGHQ 180 RNASLNMLLL RDLLNSSSYL SFQAPPPSLV DQFQLINGTS SAASSLPSSF SIPTILPGGT 240 SLNSPTSCSL RASGNFADSL IDSTMTLPRK EKNSSHTTSV PALSNSQADD MEFFRSEPSD 300 SGLLQEIIQG FLPKPSSKKS DTDCIQHSIV PLVTEMSSSQ SLSGLKESKK SEHLGGYIDY 360 CQGVPQQLSF NGITGSQVVP YSNEIPVNHL QLGQDCMVDD ICQYPDFMRT LATRVQNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 66 | 122 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590697 | 4e-77 | JX590697.1 Gossypium hirsutum clone NBRI_GE25669 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017620916.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A1U8KMR1 | 0.0 | A0A1U8KMR1_GOSHI; ethylene-responsive transcription factor ESR2-like | ||||
STRING | Gorai.002G187500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-13 | DORNROSCHEN-like |