PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36525_BGI-A2_v1.0
Common NameF383_04086
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 259aa    MW: 28399.7 Da    PI: 6.2918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36525_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.2e-14195240655
                                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k+Lq
  Cotton_A_36525_BGI-A2_v1.0 195 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKYLQ 240
                                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16192253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.76E-13193244No hitNo description
Gene3DG3DSA:4.10.280.101.2E-16194256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-11195240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MKPTPGGSSS SSGGGAEGSR AGLARFRSAP ATWLEALLEE EEEDPLKPSQ CLTQLLTGNS  60
SSTPTIRNSL LFPNSADPSG LFEPSGFQRQ NSSPADFLGN NPAAASDAYF SNFGVAANYD  120
YLSPTMDVSP SSKRASELDT QFPPTKFHSQ LKGEPSDQIS GGISNLIDVD MEKLLEDSVP  180
CRVRAKRGCA THPRSIAERV RRTRISDRIR KLQELVPNMD KQTNTADMLE EAVEYVKYLQ  240
RQIQELTEHQ KRCKCKAKD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675768.10.0PREDICTED: transcription factor bHLH81-like isoform X1
RefseqXP_017617143.10.0PREDICTED: transcription factor bHLH81-like isoform X1
SwissprotQ9C8P81e-101BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0B0NRZ30.0A0A0B0NRZ3_GOSAR; Transcription factor bHLH80-like protein
TrEMBLA0A1U8IHC50.0A0A1U8IHC5_GOSHI; transcription factor bHLH81-like isoform X1
STRINGGorai.013G138300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-91bHLH family protein