PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36213_BGI-A2_v1.0
Common NameF383_30782
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 525aa    MW: 59827.8 Da    PI: 7.6582
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36213_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.32.7e-30110195187
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                                 rW++qe+l+L+e+r+ ++ +++++++k+plW+evs++m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f
  Cotton_A_36213_BGI-A2_v1.0 110 RWPRQETLTLLEIRSHLDPKFKEANQKGPLWDEVSRVMfEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFF 190
                                 8*************************************99******************************98..55667**** PP

                    trihelix  83 dqlea 87 
                                 +qlea
  Cotton_A_36213_BGI-A2_v1.0 191 RQLEA 195
                                 ***85 PP
2trihelix58.51.8e-18390473282
                    trihelix   2 WtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkryk..kikegekkrtsessstcp 80 
                                 W++ ev  Li++r+ me+r+++   + +  lWee+++km   gfers  +Ck+kw+ + + y   k+ke++kkr +e+s+ + 
  Cotton_A_36213_BGI-A2_v1.0 390 WQEAEVSRLIQLRTAMETRFQQvgYSEEVVLWEEIAAKMGCLGFERSGLMCKDKWDTIGGSYTlmKTKESNKKR-KENSRGFD 471
                                 *********************9434799**********************************833555556655.66666666 PP

                    trihelix  81 yf 82 
                                 y+
  Cotton_A_36213_BGI-A2_v1.0 472 YY 473
                                 66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.098107170IPR001005SANT/Myb domain
PROSITE profilePS500906.864109168IPR017877Myb-like domain
PfamPF138371.4E-19110196No hitNo description
CDDcd122031.45E-20110175No hitNo description
Gene3DG3DSA:1.10.10.609.7E-5381447IPR009057Homeodomain-like
PROSITE profilePS500906.47382448IPR017877Myb-like domain
SMARTSM007171.2386450IPR001005SANT/Myb domain
PfamPF138379.7E-13389473No hitNo description
CDDcd122033.47E-17390447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEDHRHHQYA IPDLRQLLNG KPINFQAIPQ DTELFSPGHH RNLPPPQQPH HPFDVMQMVG  60
RHEFPSDSTG NTNATPMAAV ATVTSASTLS PSCGFDGEAS AFGGDGGNGR WPRQETLTLL  120
EIRSHLDPKF KEANQKGPLW DEVSRVMFEE HGYQRSGKKC REKFENLYKY YKKTKEGKAG  180
RQDGKHYRFF RQLEALYGDT SNNNGVLGQE TPLIGNSFQF HGAQNSINTQ ANQEIYHSQK  240
LCSDSLSLSS SSKFDTCSSD NNDLSSAKLK KKRGCRSWKA KIKEFIDSQI GKLMERQEAW  300
LVKLTKTLEE KEQERVLREE QWRKEAAIRI DREHKFWAKE RAWIEARDAA LMEALQNLAG  360
KQLKAASSDG ENHNENGNGT INHTVKADGW QEAEVSRLIQ LRTAMETRFQ QVGYSEEVVL  420
WEEIAAKMGC LGFERSGLMC KDKWDTIGGS YTLMKTKESN KKRKENSRGF DYYQPHETIF  480
TQGPETLRLQ PNDGSSHAVS DSCFRFFMAD GDNNLWENYG LKLSN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775463e-75JX577546.1 Gossypium hirsutum clone NBRI_GE9395 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641047.10.0PREDICTED: trihelix transcription factor PTL-like
RefseqXP_017641048.10.0PREDICTED: trihelix transcription factor PTL-like
RefseqXP_017641050.10.0PREDICTED: trihelix transcription factor PTL-like
RefseqXP_017641051.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS01e-133PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0B0PED70.0A0A0B0PED7_GOSAR; Trihelix transcription factor GT-2-like protein
STRINGGorai.002G159600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-118Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]