PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_35453_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 376aa MW: 41569.8 Da PI: 7.144

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_35453_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.7e-32	210	265	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Cotton_A_35453_BGI-A2_v1.0 210 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 265 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-29	207	268	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.185	207	267	IPR017930	Myb domain
SuperFamily	SSF46689	1.99E-18	208	268	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-27	210	265	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	212	263	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MDYAQKKRRY HEYVEALEEE RRKIQVFQRE LPLCLELVTQ AIEAHKKEMS GGSTTTDYLQ 60 GQSDCSEQTT SDVPVLEEFI PIKRSSNCSE EDDEQESHKS KETNVPAAVD KRKSDWLRSV 120 QLWNNNQSPD LPLNEDDDKI RSAVEVKKNG GAFQPFQKEK TAEMSGQSAG GKTNGSATST 180 CTTESGSRGG EANNANTSKT EEKEGQASRK QRRCWSPELH RRFLHALQQL GGSHVATPKQ 240 IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PTVHNNANPQ APQFVVVGGI WVPPPDYSTM 300 TTTTTSTKTA TVTPTSGIYT PVAAPLPALP QPSGTVAQRP QQSHSEERGS HSEGRVQSNS 360 PSISSSTHTT TDSPAF

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MDYAQKKRRY HEYVEALEEE RRKIQVFQRE LPLCLELVTQ AIEAHKKEMS GGSTTTDYLQ  60
GQSDCSEQTT SDVPVLEEFI PIKRSSNCSE EDDEQESHKS KETNVPAAVD KRKSDWLRSV  120
QLWNNNQSPD LPLNEDDDKI RSAVEVKKNG GAFQPFQKEK TAEMSGQSAG GKTNGSATST  180
CTTESGSRGG EANNANTSKT EEKEGQASRK QRRCWSPELH RRFLHALQQL GGSHVATPKQ  240
IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PTVHNNANPQ APQFVVVGGI WVPPPDYSTM  300
TTTTTSTKTA TVTPTSGIYT PVAAPLPALP QPSGTVAQRP QQSHSEERGS HSEGRVQSNS  360
PSISSSTHTT TDSPAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-12	210	263	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-12	210	263	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-12	210	263	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-12	210	263	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-12	210	263	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-12	210	263	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-12	210	263	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-12	210	263	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-12	210	263	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-12	210	263	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-12	210	263	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-12	210	263	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526443	2e-63	HQ526443.1 Gossypium herbaceum clone NBRI_D2_1421 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017639278.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	Q9FPE8	1e-106	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A0D2T831	0.0	A0A0D2T831_GOSRA; Uncharacterized protein
STRING	Gorai.008G185500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-107	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]