PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_34543_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 243aa MW: 24675.3 Da PI: 7.9639

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_34543_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.8e-39	26	85	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprCdstntkfCyynny+lsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+s Cotton_A_34543_BGI-A2_v1.0 26 TEPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKACRRYWTQGGTLRNVPVGGGTRKASKRS 85 57899**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.5E-33	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-20	33	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MPADSGDRRQ VAVPGTMASH PPPKLTEPLP CPRCDSTNTK FCYYNNYNLS QPRYFCKACR 60 RYWTQGGTLR NVPVGGGTRK ASKRSRCSSG SSPSVAVSSS SSLTHEAESA PVVNPAPVMP 120 GLGIKPEMGL ADVNLNETVD LPVNGGFTSF LNSQGEGYLT LGGYGFGAGS GFDGVWAYPG 180 NGYLGGFSGG GGGGGSGGAV GGNNSGCNTW QATSDVEGGG GLSDGECFGW PGLAISAPGK 240 GLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016666644.1	1e-175	PREDICTED: dof zinc finger protein DOF3.4-like
Refseq	XP_017629430.1	1e-175	PREDICTED: dof zinc finger protein DOF3.4-like
TrEMBL	A0A1U8HTG5	1e-173	A0A1U8HTG5_GOSHI; dof zinc finger protein DOF3.4-like
STRING	Gorai.009G207800.1	1e-107	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9465	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	7e-28	OBF binding protein 1