PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_34364_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 311aa MW: 33709.9 Da PI: 7.1897

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_34364_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1e-38	34	94	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Cotton_A_34364_BGI-A2_v1.0 34 NNQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 94 6799*****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	36	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	36	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.506	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MQDIHLIGGG RVFSGGGGGG GGDRRLGLQH QQQNNQALKC PRCDSLNTKF CYYNNYNLSQ 60 PRHFCKSCRR YWTKGGVLRN VPVGGGCRKA KRSKTKPSSE STTVAAAALA QPQSQQHLDQ 120 RKANSHSSSD SSSLIAANSN VAVTNKNNNN DSSTGGMAEA VSAVTSHSNN INVSESKLYG 180 NPNNLVFEAG LLEQRSESGI FPEIGSFTSL VTSSNNETSS FGFGTVLNGQ GQWRQQKMMS 240 VGGEEITGEL LDQTMQVELS NLHGRSESGF GPLDWQGCGD QPFFDLPNDV DQSYWSQSQW 300 SDQEHTTLYL P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	16	GGRVFSGGG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	4e-33	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	4e-33	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017640918.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A2P5Y4K5	0.0	A0A2P5Y4K5_GOSBA; Uncharacterized protein
STRING	Gorai.003G103100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	9e-49	OBF binding protein 4