PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33418_BGI-A2_v1.0
Common NameF383_34553
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 433aa    MW: 48699 Da    PI: 8.6982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33418_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-065779123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C++C++ F r  nL+ H r+H
  Cotton_A_33418_BGI-A2_v1.0 57 YVCEICNQGFQRDQNLQMHRRRH 79
                                9*********************9 PP
2zf-C2H216.72.1e-05134156123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C +C+k +  +s++k H++t+
  Cotton_A_33418_BGI-A2_v1.0 134 WVCDKCSKAYAVQSDYKAHLKTC 156
                                 58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.33E-55679No hitNo description
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359059139IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035519098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4125155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.33E-5129154No hitNo description
SMARTSM0035584134154IPR015880Zinc finger, C2H2-like
SMARTSM0035548161183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLANNSCSSL PSSEPFSCLE NGTTNINKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPTCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCDKCS KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACHMGRVIRP ESQGVQLACL SRTASSPSPS NDTHFSTAPC PWPNLALPKT KDAMFLSPTK  240
DHNSPKNAHS HNLELQLLTT SNPSEVSVSP KKHDNHSTHL QLSIGSSDIG DKVEYSTVTC  300
THKDASNKSG HHEKQAPQPL KLAMEEKTYA EEARQEAKRQ IEIAEQEFAK AKRIRQQAQA  360
ELEKAQALKD HAIKQINSTI LQITCQACQH QFQARTPPEE NSLVASYISS AVTEGVSKWR  420
WPGLALQGIE EYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-17132182555Zinc finger protein JACKDAW
5b3h_F3e-17132182555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632925.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-151IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A0B0N8130.0A0A0B0N813_GOSAR; Zinc finger MAGPIE-like protein
STRINGGorai.005G134600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-139C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]