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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_33418_BGI-A2_v1.0 | ||||||||
Common Name | F383_34553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 433aa MW: 48699 Da PI: 8.6982 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Cotton_A_33418_BGI-A2_v1.0 57 YVCEICNQGFQRDQNLQMHRRRH 79 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.7 | 2.1e-05 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Cotton_A_33418_BGI-A2_v1.0 134 WVCDKCSKAYAVQSDYKAHLKTC 156 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 56 | 79 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.33E-5 | 56 | 79 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 57 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS01359 | 0 | 59 | 139 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 98 | 128 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 125 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.33E-5 | 129 | 154 | No hit | No description |
SMART | SM00355 | 84 | 134 | 154 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 48 | 161 | 183 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MLANNSCSSL PSSEPFSCLE NGTTNINKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE 60 ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPTCLHHDP CHALGDLVGI 120 KKHFRRKHSN HKQWVCDKCS KAYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD 180 ACHMGRVIRP ESQGVQLACL SRTASSPSPS NDTHFSTAPC PWPNLALPKT KDAMFLSPTK 240 DHNSPKNAHS HNLELQLLTT SNPSEVSVSP KKHDNHSTHL QLSIGSSDIG DKVEYSTVTC 300 THKDASNKSG HHEKQAPQPL KLAMEEKTYA EEARQEAKRQ IEIAEQEFAK AKRIRQQAQA 360 ELEKAQALKD HAIKQINSTI LQITCQACQH QFQARTPPEE NSLVASYISS AVTEGVSKWR 420 WPGLALQGIE EYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-17 | 132 | 182 | 5 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 3e-17 | 132 | 182 | 5 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017632925.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | F4IPE3 | 1e-151 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A0B0N813 | 0.0 | A0A0B0N813_GOSAR; Zinc finger MAGPIE-like protein | ||||
STRING | Gorai.005G134600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-139 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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