PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32480_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 378aa    MW: 42065.2 Da    PI: 7.1691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32480_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091146168123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 y+C+ C+++F++   L  H  +H
  Cotton_A_32480_BGI-A2_v1.0 146 YECKTCNRTFPSFQALGGHRASH 168
                                 99**********99999998887 PP
2zf-C2H212.90.00034256278123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++Cg  F++   L  H+r+H
  Cotton_A_32480_BGI-A2_v1.0 256 HECSICGSEFTSGQALGGHMRRH 278
                                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-8145168No hitNo description
PfamPF139123.6E-13145170IPR007087Zinc finger, C2H2
SMARTSM003550.052146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637146173IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-8251278No hitNo description
Gene3DG3DSA:3.30.160.603.8E-4254280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.7E-11255280IPR007087Zinc finger, C2H2
SMARTSM003550.019256278IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367256283IPR007087Zinc finger, C2H2
PROSITE patternPS000280258278IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEAPEEVPMG SKDQTNNIIV KGKRTKRLRP QSPIPFAIAS NNSIFNGDNV VNMENNNNNY  60
GEYLSLSSSS DNYQDSTTEE EEDMANCLIL LAQGQSREPP LKLLQQPDDH HPHQQHDSGV  120
VYNKFNSRRF MEAASNGDGK AGYYVYECKT CNRTFPSFQA LGGHRASHKK PKAAATVDEK  180
IRQFTAGTTT IGLSDEEEGQ HQQQQFMKIT NNVSSLSLQL SNTNNYNNHN INNRVLYGNN  240
NKDNNNNNNG KPNKVHECSI CGSEFTSGQA LGGHMRRHRG SIGGGSNSVV AANTALSLKV  300
ATPLEQPQQP KKPKNVLSLD LDLNLPAPDD VDHREPKFSF ASKQQQQQQQ QQQQQQQQQQ  360
QQQSALVFSA PTLVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146150.0JX614615.1 Gossypium hirsutum clone NBRI_GE58141 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648628.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D2RRY90.0A0A0D2RRY9_GOSRA; Uncharacterized protein
STRINGGorai.011G234400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-48C2H2 family protein