PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_31550_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 423aa MW: 46223.5 Da PI: 4.9164

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_31550_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.3e-08	331	371	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P + K++ a++L +A +Y+k L Cotton_A_31550_BGI-A2_v1.0 331 ARQRRERISERIRVLQRLVPGgN------KMDTASMLDEAANYLKFL 371 69****************955......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.11	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-14	327	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-12	328	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-11	330	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-5	331	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.68E-4	344	376	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MDGLGWDELN SLPVWNSEPN DVEDSFLISN SNSSVYGDKM NLPDDIFVNS IQELQDAQPS 60 LVNPDADIVS EMVNPQPVPA SACGITQEWC SSPLLNSSAY GLSSSNASVS DIGSMAVHSQ 120 VINGLPNGNA VVGGTTTTAS SLESLECLLS ATNSNTDTSV EDDGLSMIFS DCKSLWNFVA 180 TTSTTTPVSS GESQSCSDQY TNNMKQSETN SSSSKRRNDD QSEFKVGLTR VYSNISAATS 240 GGFRLIDKNP PKSKQPRLEK ALPSSSNINF QQPSSSASSS IDEPDPEAIA QMKEMIYRAA 300 AFRPVNLGME VMEKPKRKNV RISTDPQTVA ARQRRERISE RIRVLQRLVP GGNKMDTASM 360 LDEAANYLKF LRSQVKALEN LGHPMTAFNP LPINQALPMQ THNFLLLNHN YIRHSIDFKK 420 HYP

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MDGLGWDELN SLPVWNSEPN DVEDSFLISN SNSSVYGDKM NLPDDIFVNS IQELQDAQPS  60
LVNPDADIVS EMVNPQPVPA SACGITQEWC SSPLLNSSAY GLSSSNASVS DIGSMAVHSQ  120
VINGLPNGNA VVGGTTTTAS SLESLECLLS ATNSNTDTSV EDDGLSMIFS DCKSLWNFVA  180
TTSTTTPVSS GESQSCSDQY TNNMKQSETN SSSSKRRNDD QSEFKVGLTR VYSNISAATS  240
GGFRLIDKNP PKSKQPRLEK ALPSSSNINF QQPSSSASSS IDEPDPEAIA QMKEMIYRAA  300
AFRPVNLGME VMEKPKRKNV RISTDPQTVA ARQRRERISE RIRVLQRLVP GGNKMDTASM  360
LDEAANYLKF LRSQVKALEN LGHPMTAFNP LPINQALPMQ THNFLLLNHN YIRHSIDFKK  420
HYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	336	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622292.1	0.0	PREDICTED: transcription factor bHLH87-like isoform X1
Swissprot	Q8S3D2	8e-79	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2P5YNC5	0.0	A0A2P5YNC5_GOSBA; Uncharacterized protein
STRING	Gorai.003G060900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	7e-63	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]