PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_31259_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 339aa MW: 37455.3 Da PI: 8.0978

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_31259_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	4.9e-14	73	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+e++++a +++ + Wk+I + +g +t q++s+ qky Cotton_A_31259_BGI-A2_v1.0 73 RESWTEQEHEKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 117 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-17	67	123	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.88	68	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-7	71	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-18	71	120	IPR006447	Myb domain, plants
SMART	SM00717	2.4E-11	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-11	73	117	IPR001005	SANT/Myb domain
CDD	cd00167	7.89E-9	75	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MVSVNPNPAQ GFYFFDPMNM GLPGVNSAPP ANKVAPPLHV PPPPATSGAG NTTVYPEDPS 60 KKIRKPYTIT KSRESWTEQE HEKFLEALQL FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK 120 VQKNGTSEHV PPPRPKRKAA HPYPQKAPKT ASVVPQVAGP YQSSSALHEP GYTYRRDSSS 180 TPGNPVATAS LSSWSYNSVP PVTVSQVTKD DAVLAGPTIV HNSCYSSSSE STPRTWSFGE 240 TIDRGDHWKQ SRVLPDFAEV YSFIGSVFDP GTSGHLQKLK QMDPINLETV LLLMRNLSVN 300 LASPDFEDHF LIMPSCDIAL EFCISTLFFS TLEVYTSLN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016682107.1	0.0	PREDICTED: protein REVEILLE 5-like isoform X1
Refseq	XP_016682108.1	0.0	PREDICTED: protein REVEILLE 5-like isoform X1
Swissprot	C0SVG5	1e-104	RVE5_ARATH; Protein REVEILLE 5
TrEMBL	A0A1U8J0J1	0.0	A0A1U8J0J1_GOSHI; protein REVEILLE 5-like isoform X1
TrEMBL	A0A2P5XN86	0.0	A0A2P5XN86_GOSBA; Uncharacterized protein
STRING	Gorai.004G159700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.2	3e-90	MYB_related family protein

Publications ? help Back to Top
Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]