PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_30808_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 246aa MW: 28500.6 Da PI: 6.788 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.6 | 5e-27 | 188 | 237 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +r++W++eLH+rFvea++ LGG+e+AtPk+i++lm+v+gLt+e+vkSHLQ Cotton_A_30808_BGI-A2_v1.0 188 NRRCWSSELHSRFVEALNMLGGIEVATPKQIRNLMQVEGLTIEQVKSHLQ 237 79************************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.445 | 184 | 244 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-13 | 185 | 238 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 186 | 237 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-22 | 187 | 238 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-6 | 189 | 237 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MNPSSIELSL SLKPSYVPKS RSSLLLDLSK IDNQYYKLSV LSDYICKLEE ELARVQPFKH 60 LLPLCTLLLM EVWAHGLIDP ITYETETLKD KLLNINNEKE QREIQEECDA NLQSCKEKGN 120 NMERLMLGYK KNSTWNSVGE SSSDGKGKEV AAIDQYSWRN DNQGFMYLNN YDHHHHPKPL 180 TQPIWKNNRR CWSSELHSRF VEALNMLGGI EVATPKQIRN LMQVEGLTIE QVKSHLQVII 240 HLFMLN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582232 | 5e-72 | JX582232.1 Gossypium hirsutum clone NBRI_GE15026 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017637644.1 | 1e-145 | PREDICTED: uncharacterized protein LOC108479503 | ||||
TrEMBL | A0A2P5YB77 | 1e-152 | A0A2P5YB77_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G089700.1 | 1e-133 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15410 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.2 | 8e-24 | G2-like family protein |