PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_30718_BGI-A2_v1.0 | ||||||||
Common Name | F383_24587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 471aa MW: 50781.1 Da PI: 7.6187 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.9 | 5.3e-39 | 86 | 145 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Cotton_A_30718_BGI-A2_v1.0 86 PDKILPCPRCNSFDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 145 7899******************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-29 | 79 | 143 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-31 | 88 | 144 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.64 | 90 | 144 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 92 | 128 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MKGGDPAFKL FGRKIPMPQS QIHPGDTTIV EIETSQANTC QSITVENDTE ECRTSLKSNG 60 IRMNCIVKDE QVETNGTNQE KVFKKPDKIL PCPRCNSFDT KFCYFNNYNV NQPRHFCKNC 120 QRYWTAGGTM RNVPIGAGRR KNKHLASQYR QIIASSGGVP VTRIENPDST TQQLLSPGET 180 TTAMGNGTVL KFGAEAPLCE SMETVLSLGE QKRCVETSTV SSGEIREEPS LCGSSITPCG 240 MPGNVMQKER IGSAGPNELN TKHPTQCYPV SPCIFPWNTG PSNIASMATG QCSSEHIGAP 300 NGTTSNTVQW CPAPMVAVPG FCPSNIQLQF VPAYWGCIPL WASGGGNVSI SNSSGCLSPS 360 SSTSNSCGSG NGLPTLGKHY REANVVEEEQ SEKCILVPKT LRIDNPNEAS RSPIWATLGI 420 KPGQKDPLRG GKIFNAFESK AEGKDHVSDG SYILEANPAA LSRSHTFQES T |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017627568.1 | 0.0 | PREDICTED: cyclic dof factor 2-like | ||||
TrEMBL | A0A0B0P2W1 | 0.0 | A0A0B0P2W1_GOSAR; Dof zinc finger DOF5.2-like protein | ||||
STRING | Gorai.007G253500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15591 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-66 | cycling DOF factor 2 |