PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30487_BGI-A2_v1.0
Common NameF383_21492
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 387aa    MW: 42015.2 Da    PI: 8.682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30487_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-076211126
                                GTS--TTTTT-SS-SS CS
                     zf-CCCH 11 rtGtCkyGdrCkFaHg 26
                                rtG C yG++C+F+H+
  Cotton_A_30487_BGI-A2_v1.0  6 RTGSCGYGSNCRFNHP 21
                                9**************8 PP
2zf-CCCH375.6e-124064327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                ++ C +f++tGtCkyG++Ck++H++
  Cotton_A_30487_BGI-A2_v1.0 40 QPDCGYFLKTGTCKYGSTCKYHHPK 64
                                789********************96 PP
3zf-CCCH38.51.9e-1286109427
                                 ---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                 + C++f+rtG Ck+G  CkF+H++
  Cotton_A_30487_BGI-A2_v1.0  86 KSCPYFMRTGSCKFGVACKFHHPQ 109
                                 66********************97 PP
4zf-CCCH39.87.8e-13228253227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++Cr+++ tGtCkyG+ Ck++H++
  Cotton_A_30487_BGI-A2_v1.0 228 DQPECRYYMNTGTCKYGSDCKYHHPK 253
                                 689*********************96 PP
5zf-CCCH29.41.3e-09273298126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 ++++ C+ +  +G CkyG++C+F H+
  Cotton_A_30487_BGI-A2_v1.0 273 PGQPVCSSYTMYGLCKYGPTCRFDHP 298
                                 5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.991123IPR000571Zinc finger, CCCH-type
SMARTSM0035613322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4521IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-5621IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-63764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7183765IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-94064IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-64165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-44363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-681110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.44682110IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-584109IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-1085109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-587108IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6226253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549226254IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10228253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-7229254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-6232253IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5272299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892272300IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6274298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4277297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MIVIKRTGSC GYGSNCRFNH PAYDAQGGQY REELPERVGQ PDCGYFLKTG TCKYGSTCKY  60
HHPKDRNGAG PVTFNILGLP MRQDEKSCPY FMRTGSCKFG VACKFHHPQP ASPGTGLPVN  120
GPVGSSVLPP TGVPYAGGFP PGSLPRAPFV SGPHLQTQSY MPVVVSPSQN IIPGNGWSTY  180
MGNMSPASSA GILGSNYTYN SMNPAELGSS GQMLLSSAPA SNFPERPDQP ECRYYMNTGT  240
CKYGSDCKYH HPKERIANSA MSSVGPLGLP SRPGQPVCSS YTMYGLCKYG PTCRFDHPYT  300
GYPYNYALSY PLSMFDTALL TYQRMTPSPN LYEAPLPSRV PDWARNTDPA SKKRQNLVTK  360
NSDDSSEQVA SPPHSLQSSS KTSHDQN
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626691.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD91e-108C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0B0MLG70.0A0A0B0MLG7_GOSAR; Uncharacterized protein
STRINGGorai.001G097100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-110C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]