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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29902_BGI-A2_v1.0 | ||||||||
Common Name | F383_02593, F383_12945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 336aa MW: 38118 Da PI: 5.0701 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7.2e-12 | 169 | 212 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Cotton_A_29902_BGI-A2_v1.0 169 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 212 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 166 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 169 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-13 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.14E-5 | 170 | 216 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.2E-16 | 170 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00697 | 262 | 303 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MELSQHGSLE ELMAAAPRRD SWTTFSNGVT EFFPNGWNFE SFDATPPNLA FLGFSTTTDE 60 IENPSFECPF SDQPYPFGDG FSVSEMDAST SPFPPAHEDY PSMVDDEDQL GLLTTDHHHH 120 QQHSLEEMKH SCKVEMEQTS NNIHGFNMGL FVEKKTKAKR LEGQPSKNLM AERRRRKRLN 180 DRLSMLRSIV PKISKMDRTS ILGDTIDYMK ELLEKVNKLK EDKTKLGSNH LSLVNNMKEL 240 KPNEMLVRNS PKFDVERRET DTRIDIQCAT KPGLLLSTVN TLEALGLEIQ ECVISCFNDF 300 SMQASCSEVA EQRTLMSTED IKQALFRNAG YGGTCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 178 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622299.1 | 0.0 | PREDICTED: transcription factor bHLH93 | ||||
Swissprot | Q9LSL1 | 8e-89 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0B0N8G7 | 0.0 | A0A0B0N8G7_GOSAR; Transcription factor bHLH93-like protein | ||||
TrEMBL | A0A2P5YUD2 | 0.0 | A0A2P5YUD2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G035900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 5e-82 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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