PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29728_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 480aa MW: 52277.6 Da PI: 6.4946

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29728_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.3e-39	92	151	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Cotton_A_29728_BGI-A2_v1.0 92 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 151 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-30	85	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.4E-32	94	150	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	96	150	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	98	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MNGGDPAFKL FGRKIPVLEP QIHAGDTCGE ETNPATETSQ TNTSGKPDKS IKVEKGKEEV 60 QTCMKLDEVQ INPKDEQPET NRTDQEIVFK KPDKILPCPR CNSLDTKFCY FNNYNVNQPR 120 HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LTSQYRQIIV SSDGVPMTQI ETPDSANQQL 180 VSPCESTAAF KPSMGNGTVL KFGAEAPLCE SMETALSLGE QKRCVETGTV TCGETREEPS 240 SCGSSVAPCS IRGNEFPGHV MQKERIGVTG PNDRNTQHPP QCYPVPPWVF PWNQGPNNVA 300 PVAAIQYSSD RISAPNSSTS NVVPQWCPTP LVAVPGFCPP NIPVQFVPAY WGCMPLWTTS 360 GGNVSFSGSN GCLSPSSSTS NSSCSGNVSP TLGKHSREAN FVEEEKPEKC ILVPKTLRMD 420 DPKEASRSPI WATLGIRPAQ KDPLQGKDFD SFESKAEGKD HIPDGNHILE ANPAPFSEST

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MNGGDPAFKL FGRKIPVLEP QIHAGDTCGE ETNPATETSQ TNTSGKPDKS IKVEKGKEEV  60
QTCMKLDEVQ INPKDEQPET NRTDQEIVFK KPDKILPCPR CNSLDTKFCY FNNYNVNQPR  120
HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LTSQYRQIIV SSDGVPMTQI ETPDSANQQL  180
VSPCESTAAF KPSMGNGTVL KFGAEAPLCE SMETALSLGE QKRCVETGTV TCGETREEPS  240
SCGSSVAPCS IRGNEFPGHV MQKERIGVTG PNDRNTQHPP QCYPVPPWVF PWNQGPNNVA  300
PVAAIQYSSD RISAPNSSTS NVVPQWCPTP LVAVPGFCPP NIPVQFVPAY WGCMPLWTTS  360
GGNVSFSGSN GCLSPSSSTS NSSCSGNVSP TLGKHSREAN FVEEEKPEKC ILVPKTLRMD  420
DPKEASRSPI WATLGIRPAQ KDPLQGKDFD SFESKAEGKD HIPDGNHILE ANPAPFSEST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627059.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A1U8MCD6	0.0	A0A1U8MCD6_GOSHI; cyclic dof factor 2-like
STRING	Gorai.004G252700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-61	cycling DOF factor 2