PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_28174_BGI-A2_v1.0

Common Name

F383_04024

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 392aa MW: 44713.6 Da PI: 6.6209

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_28174_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	68	92	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ + +H+++ H Cotton_A_28174_BGI-A2_v1.0 68 YSCGLCGKGYRSSKAYSQHLKSraH 92 99******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	0.073	1	35	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	8.29E-6	3	36	No hit	No description
SMART	SM00355	33	4	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00451	3.1	65	99	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	6.95E-6	67	104	No hit	No description
Pfam	PF12171	6.7E-5	68	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.097	68	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.3	68	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	92	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.34E-6	153	226	No hit	No description
Pfam	PF12756	1.8E-25	167	268	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	25	216	243	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MPGLTCNACN REFLDEAERK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QTALAEEKDK 60 QNETPMLYSC GLCGKGYRSS KAYSQHLKSR AHIAQTSQHP EEEKAAIIKP FIRRAVNKPP 120 QPRDMNDEES DDNWVEVDPD EDLASGDEMH IDNGEETGRE ELDPCCCFMC NLKHDTIESC 180 MVHMHKFHGF FIPDVEYLKN PEGLLIYLGL KVKRDFICLY CNERCHPFTS LEAVRKHMAA 240 KGHCKVHYGD GDEDEEAELE EFYDYSSSYV DDWGKQLVAV GDKDSTVELG GGSELIITRK 300 SDERIMSKTL GSREYSRYYR QSPRPSPANN MAITAALASR YRSMGLATVQ SKEQIVRMKV 360 MKAMNRSGVE TMRTKVGMKN NVIQNLPKNV PY

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MPGLTCNACN REFLDEAERK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QTALAEEKDK  60
QNETPMLYSC GLCGKGYRSS KAYSQHLKSR AHIAQTSQHP EEEKAAIIKP FIRRAVNKPP  120
QPRDMNDEES DDNWVEVDPD EDLASGDEMH IDNGEETGRE ELDPCCCFMC NLKHDTIESC  180
MVHMHKFHGF FIPDVEYLKN PEGLLIYLGL KVKRDFICLY CNERCHPFTS LEAVRKHMAA  240
KGHCKVHYGD GDEDEEAELE EFYDYSSSYV DDWGKQLVAV GDKDSTVELG GGSELIITRK  300
SDERIMSKTL GSREYSRYYR QSPRPSPANN MAITAALASR YRSMGLATVQ SKEQIVRMKV  360
MKAMNRSGVE TMRTKVGMKN NVIQNLPKNV PY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6qik_z	9e-20	4	371	6	411	Cytoplasmic 60S subunit biogenesis factor REH1
6qt0_z	9e-20	4	371	6	411	Cytoplasmic 60S subunit biogenesis factor REH1
6qtz_z	9e-20	4	371	6	411	Cytoplasmic 60S subunit biogenesis factor REH1
6ri5_z	9e-20	4	371	6	411	Cytoplasmic 60S subunit biogenesis factor REH1
6s05_z	9e-20	4	371	6	411	Cytoplasmic 60S subunit biogenesis factor REH1
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Functional Description ? help Back to Top
Source	Description
UniProt	Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250\|UniProtKB:P38344, ECO:0000269\|PubMed:24038679}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017640022.1	0.0	PREDICTED: cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like
Swissprot	Q8H1G5	0.0	REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBL	A0A0B0NSD1	0.0	A0A0B0NSD1_GOSAR; Zinc finger protein
STRING	Gorai.001G001500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3429	5	11

Publications ? help Back to Top
Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiol., 2013. 163(4): p. 1623-39 [PMID:24038679] Beine-Golovchuk O, et al. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiol., 2018. 176(3): p. 2251-2276 [PMID:29382692]