PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_27666_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 370aa MW: 41746.5 Da PI: 6.785

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_27666_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.2	1.4e-20	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k Cotton_A_27666_BGI-A2_v1.0 10 KLENTNGRQATYAKRKHGIMKKANELSILCDVEIILLMFSPTNK 53 6799*************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.563	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.9E-29	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.33E-25	2	82	No hit	No description
SuperFamily	SSF55455	2.22E-25	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD VEIILLMFSP TNKPSVCIGK 60 RSSIEEILEK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIHEFLGSS TQTIEDLTNQ 120 ARLLQARLSE IHRRLSCWTD VDKINNVEHL GQMEDSLKDY LNQIRAHKEN LGKQQLLPME 180 CTSQFQNEMH VPFRMGIEQQ LQSLAWMANN DSRSMALTED PNLIPPRDVE CSASSSFGSY 240 SGYFGTPKSS ELSSSGQENG ILNDLQLGGQ CPFFSYDLSI LNDHKFQPVA EMNFPETPVD 300 YHVNGVLAGP RAGYDPNQGS WASTSGPCAV TMFDEPLYTG DKKILDVLTA SMDKIARNLS 360 REIYPQLSWI

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD VEIILLMFSP TNKPSVCIGK  60
RSSIEEILEK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIHEFLGSS TQTIEDLTNQ  120
ARLLQARLSE IHRRLSCWTD VDKINNVEHL GQMEDSLKDY LNQIRAHKEN LGKQQLLPME  180
CTSQFQNEMH VPFRMGIEQQ LQSLAWMANN DSRSMALTED PNLIPPRDVE CSASSSFGSY  240
SGYFGTPKSS ELSSSGQENG ILNDLQLGGQ CPFFSYDLSI LNDHKFQPVA EMNFPETPVD  300
YHVNGVLAGP RAGYDPNQGS WASTSGPCAV TMFDEPLYTG DKKILDVLTA SMDKIARNLS  360
REIYPQLSWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	7e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	7e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	7e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	7e-13	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236448	0.0	HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618533.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Refseq	XP_017618534.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Swissprot	Q1PFA4	1e-117	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2P5XVE0	0.0	A0A2P5XVE0_GOSBA; Uncharacterized protein
STRING	Gorai.013G086600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-108	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]