PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27326_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 253aa    MW: 29198.5 Da    PI: 5.8499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27326_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-1358100754
                                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Cotton_A_27326_BGI-A2_v1.0  58 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 100
                                 57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2451100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.26E-1455104No hitNo description
SMARTSM003532.7E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1757115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-1158100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLAMENIENI GDEYKNYWET KYFLENEEYS WPIDEFSGYY DSSSPDGAAS SVAAKNIVSE  60
RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIDYIQEL HDQEGRIQAE IRELESGKLK  120
KNPGFEYDQE LSGLRSKKTK LDNIFDYGGS RASPIEVLEL KVTHMGEKTM VVSITCSKKT  180
DTMVRLCEVF ESLKLKIITA NITVVSGRLL KTVFVEVSPF FVFLELLFFV PFHWVTFYIY  240
FVSCVVVRNN NYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1456133980Transcription factor MYC2
5gnj_B4e-1456133980Transcription factor MYC2
5gnj_E4e-1456133980Transcription factor MYC2
5gnj_F4e-1456133980Transcription factor MYC2
5gnj_G4e-1456133980Transcription factor MYC2
5gnj_I4e-1456133980Transcription factor MYC2
5gnj_M4e-1456133980Transcription factor MYC2
5gnj_N4e-1456133980Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628370.11e-158PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV92e-80BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0B0N0J51e-156A0A0B0N0J5_GOSAR; Transcription factor bHLH35-like protein
STRINGGorai.013G242800.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.33e-81bHLH family protein