PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24189_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 103aa    MW: 11219 Da    PI: 6.8477
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24189_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.23.3e-08434535
                    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                                 C+ +e+  +  fC  ++  lC  C ++ Hk
  Cotton_A_24189_BGI-A2_v1.0  4 LCDACESAAAVVFCAADEAALCSACDVKVHK 34
                                7***************************995 PP

2zf-B_box26.11.8e-085291237
                    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                                + ++C+ +e+ +  ++Ce +++ lC +C ++ H g    H
  Cotton_A_24189_BGI-A2_v1.0 52 DVPRCDICENAPGFFYCEIDGSSLCLQCDMAVHVGgkrtH 91
                                6799****************************96655566 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.5E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.983147IPR000315B-box-type zinc finger
PfamPF006434.6E-7344IPR000315B-box-type zinc finger
CDDcd000212.22E-5334No hitNo description
SMARTSM003362.8E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501198.7455196IPR000315B-box-type zinc finger
PfamPF006434.8E-65291IPR000315B-box-type zinc finger
CDDcd000211.41E-55484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MRTLCDACES AAAVVFCAAD EAALCSACDV KVHKCNKLAS RHVRVGLENP SDVPRCDICE  60
NAPGFFYCEI DGSSLCLQCD MAVHVGGKRT HGRYLLLRQR VEV
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3830833e-40FQ383083.1 Vitis vinifera clone SS0ABG32YD22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648551.13e-70PREDICTED: B-box zinc finger protein 18-like
RefseqXP_017648573.13e-70PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM57e-59BBX19_ARATH; B-box zinc finger protein 19
SwissprotQ9SJU54e-59BBX18_ARATH; B-box zinc finger protein 18
TrEMBLA0A1U8IKC95e-68A0A1U8IKC9_GOSHI; B-box zinc finger protein 18-like isoform X1
STRINGPOPTR_0007s13830.11e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.14e-47DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]