PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24189_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 103aa MW: 11219 Da PI: 6.8477

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24189_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.2	3.3e-08	4	34	5	35
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +e+ + fC ++ lC C ++ Hk Cotton_A_24189_BGI-A2_v1.0 4 LCDACESAAAVVFCAADEAALCSACDVKVHK 34 7***************************995 PP
2	zf-B_box	26.1	1.8e-08	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ + ++Ce +++ lC +C ++ H g H Cotton_A_24189_BGI-A2_v1.0 52 DVPRCDICENAPGFFYCEIDGSSLCLQCDMAVHVGgkrtH 91 6799****************************96655566 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	7.5E-7	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.983	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.6E-7	3	44	IPR000315	B-box-type zinc finger
CDD	cd00021	2.22E-5	3	34	No hit	No description
SMART	SM00336	2.8E-11	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.745	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.8E-6	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	1.41E-5	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MRTLCDACES AAAVVFCAAD EAALCSACDV KVHKCNKLAS RHVRVGLENP SDVPRCDICE 60 NAPGFFYCEI DGSSLCLQCD MAVHVGGKRT HGRYLLLRQR VEV

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ383083	3e-40	FQ383083.1 Vitis vinifera clone SS0ABG32YD22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648551.1	3e-70	PREDICTED: B-box zinc finger protein 18-like
Refseq	XP_017648573.1	3e-70	PREDICTED: B-box zinc finger protein 18-like
Swissprot	C0SVM5	7e-59	BBX19_ARATH; B-box zinc finger protein 19
Swissprot	Q9SJU5	4e-59	BBX18_ARATH; B-box zinc finger protein 18
TrEMBL	A0A1U8IKC9	5e-68	A0A1U8IKC9_GOSHI; B-box zinc finger protein 18-like isoform X1
STRING	POPTR_0007s13830.1	1e-63	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2168	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21320.1	4e-47	DBB family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]