PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24186_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 172aa    MW: 18880.2 Da    PI: 6.0716
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24186_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.74.1e-07440537
                    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                                 C+ +e+  +  fC  ++  lC  C +++ +     H
  Cotton_A_24186_BGI-A2_v1.0  4 LCDACESAAAVVFCAADEAALCSACDVHKCNKlasrH 40
                                7*************************98875455556 PP

2zf-B_box24.75e-085089237
                    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                                + ++C+ +e+ +  ++Ce +++ lC +C ++ H g    H
  Cotton_A_24186_BGI-A2_v1.0 50 DVPRCDICENAPGFFYCEIDGSSLCLQCDMAVHVGgkrtH 89
                                6799****************************96655556 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0011145IPR000315B-box-type zinc finger
PROSITE profilePS501199.812145IPR000315B-box-type zinc finger
CDDcd000214.58E-5343No hitNo description
PROSITE profilePS501198.7454994IPR000315B-box-type zinc finger
SMARTSM003362.8E-114994IPR000315B-box-type zinc finger
PfamPF006431.3E-55089IPR000315B-box-type zinc finger
CDDcd000219.76E-75282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRTLCDACES AAAVVFCAAD EAALCSACDV HKCNKLASRH VRVGLENPSD VPRCDICENA  60
PGFFYCEIDG SSLCLQCDMA VHVGGKRTHG RYLLLRQRVE FPGEKPGNVE DPTSQQVGPN  120
DTIRGQNQIT KTTAGEKQQN HKDSPVEEKD AKVDGHHNMG SEMIDLNMKP HW
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3830834e-47FQ383083.1 Vitis vinifera clone SS0ABG32YD22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016678598.11e-127PREDICTED: B-box zinc finger protein 18-like isoform X2
SwissprotQ9SJU51e-63BBX18_ARATH; B-box zinc finger protein 18
TrEMBLA0A1U8IQA11e-125A0A1U8IQA1_GOSHI; B-box zinc finger protein 18-like isoform X2
STRINGGorai.007G196900.16e-96(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21320.18e-52DBB family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang X,Lin R
    Light signaling differentially regulates the expression of group IV of the B-box zinc finger family.
    Plant Signal Behav, 2017. 12(9): p. e1365213
    [PMID:28922622]