PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_24186_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | DBB | ||||||||
Protein Properties | Length: 172aa MW: 18880.2 Da PI: 6.0716 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.7 | 4.1e-07 | 4 | 40 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....H 37 C+ +e+ + fC ++ lC C +++ + H Cotton_A_24186_BGI-A2_v1.0 4 LCDACESAAAVVFCAADEAALCSACDVHKCNKlasrH 40 7*************************98875455556 PP | |||||||
2 | zf-B_box | 24.7 | 5e-08 | 50 | 89 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ + ++Ce +++ lC +C ++ H g H Cotton_A_24186_BGI-A2_v1.0 50 DVPRCDICENAPGFFYCEIDGSSLCLQCDMAVHVGgkrtH 89 6799****************************96655556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.0011 | 1 | 45 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.812 | 1 | 45 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.58E-5 | 3 | 43 | No hit | No description |
PROSITE profile | PS50119 | 8.745 | 49 | 94 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.8E-11 | 49 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-5 | 50 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.76E-7 | 52 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MRTLCDACES AAAVVFCAAD EAALCSACDV HKCNKLASRH VRVGLENPSD VPRCDICENA 60 PGFFYCEIDG SSLCLQCDMA VHVGGKRTHG RYLLLRQRVE FPGEKPGNVE DPTSQQVGPN 120 DTIRGQNQIT KTTAGEKQQN HKDSPVEEKD AKVDGHHNMG SEMIDLNMKP HW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269|PubMed:20872270, ECO:0000269|PubMed:23238922}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ383083 | 4e-47 | FQ383083.1 Vitis vinifera clone SS0ABG32YD22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016678598.1 | 1e-127 | PREDICTED: B-box zinc finger protein 18-like isoform X2 | ||||
Swissprot | Q9SJU5 | 1e-63 | BBX18_ARATH; B-box zinc finger protein 18 | ||||
TrEMBL | A0A1U8IQA1 | 1e-125 | A0A1U8IQA1_GOSHI; B-box zinc finger protein 18-like isoform X2 | ||||
STRING | Gorai.007G196900.1 | 6e-96 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2168 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21320.1 | 8e-52 | DBB family protein |
Publications ? help Back to Top | |||
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