PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22397_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | RAV | ||||||||
Protein Properties | Length: 340aa MW: 38735.8 Da PI: 8.7722 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.2 | 6.2e-11 | 43 | 89 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+ykGV + k +g+W A+++ n ++r++lg+f ++ +Aa a++ a+ k+ Cotton_A_22397_BGI-A2_v1.0 43 SQYKGVMRQK-NGQWGAQLYT---N--HTRIWLGTFKSEIDAAMAYDSAAIKF 89 78****8676.8******655...3..5**********99*********9875 PP | |||||||
2 | B3 | 79.7 | 3e-25 | 162 | 258 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 f+k+ltpsdv+k++rlv+pkk+a ++ g+ k+++++l+++d+ W+++++y+++s+++v+t+GW++F Cotton_A_22397_BGI-A2_v1.0 162 FQKELTPSDVGKLNRLVIPKKYAVKYfppvsgtemenvdvGHRKTNDVELIFYDKFMGIWKFRYCYWNSSQSFVFTRGWNRFL 244 99**************************************99999************************************** PP HHHT--TT-EEEEE CS B3 70 kangLkegDfvvFk 83 k+++Lk++D+v F Cotton_A_22397_BGI-A2_v1.0 245 KEKELKANDVVSFF 258 ***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.18E-21 | 43 | 101 | No hit | No description |
SuperFamily | SSF54171 | 6.08E-15 | 43 | 101 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-7 | 43 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-17 | 44 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-17 | 44 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.792 | 44 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-30 | 158 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-25 | 160 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.36E-23 | 161 | 273 | No hit | No description |
SMART | SM01019 | 2.4E-20 | 162 | 277 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.744 | 162 | 277 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-22 | 162 | 258 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEAEMSSVIL SGEANINSDV SDSTSTTHQA NKRQRCGGKG NSSQYKGVMR QKNGQWGAQL 60 YTNHTRIWLG TFKSEIDAAM AYDSAAIKFC TGDTHRNFPW NEITIEEPTF LSHYSGEAVL 120 SMIRDGSYQY KFMDFIKAHS RNTKLNLVGT YSNEGLICKL LFQKELTPSD VGKLNRLVIP 180 KKYAVKYFPP VSGTEMENVD VGHRKTNDVE LIFYDKFMGI WKFRYCYWNS SQSFVFTRGW 240 NRFLKEKELK ANDVVSFFVC EYRKENEDRR FCMIDANKSG NGGTFVAANN VHVGIEVDLQ 300 LRLGHCYLVQ EAQGSTAAVK PKQDDKTEGF KLFGMQISRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-28 | 158 | 281 | 10 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614752 | 3e-52 | JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617649.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
Swissprot | Q9C6P5 | 2e-91 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A1U8IAG6 | 0.0 | A0A1U8IAG6_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like | ||||
STRING | Gorai.013G204200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15647 | 6 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 7e-94 | RAV family protein |