PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22397_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 340aa    MW: 38735.8 Da    PI: 8.7722
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22397_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.2e-114389153
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                                s+ykGV + k +g+W A+++    n  ++r++lg+f ++ +Aa a++ a+ k+
  Cotton_A_22397_BGI-A2_v1.0 43 SQYKGVMRQK-NGQWGAQLYT---N--HTRIWLGTFKSEIDAAMAYDSAAIKF 89
                                78****8676.8******655...3..5**********99*********9875 PP
2B379.73e-25162258183
                                 EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                 f+k+ltpsdv+k++rlv+pkk+a ++              g+ k+++++l+++d+    W+++++y+++s+++v+t+GW++F 
  Cotton_A_22397_BGI-A2_v1.0 162 FQKELTPSDVGKLNRLVIPKKYAVKYfppvsgtemenvdvGHRKTNDVELIFYDKFMGIWKFRYCYWNSSQSFVFTRGWNRFL 244
                                 99**************************************99999************************************** PP

                                 HHHT--TT-EEEEE CS
                          B3  70 kangLkegDfvvFk 83 
                                 k+++Lk++D+v F 
  Cotton_A_22397_BGI-A2_v1.0 245 KEKELKANDVVSFF 258
                                 ***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.18E-2143101No hitNo description
SuperFamilySSF541716.08E-1543101IPR016177DNA-binding domain
PfamPF008473.3E-74389IPR001471AP2/ERF domain
SMARTSM003802.1E-1744105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-174499IPR001471AP2/ERF domain
PROSITE profilePS5103216.7924499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.9E-30158277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-25160261IPR015300DNA-binding pseudobarrel domain
CDDcd100176.36E-23161273No hitNo description
SMARTSM010192.4E-20162277IPR003340B3 DNA binding domain
PROSITE profilePS5086311.744162277IPR003340B3 DNA binding domain
PfamPF023627.6E-22162258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEAEMSSVIL SGEANINSDV SDSTSTTHQA NKRQRCGGKG NSSQYKGVMR QKNGQWGAQL  60
YTNHTRIWLG TFKSEIDAAM AYDSAAIKFC TGDTHRNFPW NEITIEEPTF LSHYSGEAVL  120
SMIRDGSYQY KFMDFIKAHS RNTKLNLVGT YSNEGLICKL LFQKELTPSD VGKLNRLVIP  180
KKYAVKYFPP VSGTEMENVD VGHRKTNDVE LIFYDKFMGI WKFRYCYWNS SQSFVFTRGW  240
NRFLKEKELK ANDVVSFFVC EYRKENEDRR FCMIDANKSG NGGTFVAANN VHVGIEVDLQ  300
LRLGHCYLVQ EAQGSTAAVK PKQDDKTEGF KLFGMQISRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2815828110120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147523e-52JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617649.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P52e-91RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1U8IAG60.0A0A1U8IAG6_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGGorai.013G204200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-94RAV family protein