PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22172_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 206aa MW: 23246.1 Da PI: 9.7739 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.7 | 3.4e-15 | 136 | 187 | 4 | 55 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 ++r +r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +Lk + e+l+ Cotton_A_22172_BGI-A2_v1.0 136 DRRHKRMIKNRESAARSRARKQAYTNELELEVAHLMEENARLKRQQEQLRVA 187 689****************************************999999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-12 | 133 | 197 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.369 | 135 | 185 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.25E-11 | 137 | 185 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.0E-14 | 137 | 186 | No hit | No description |
Pfam | PF00170 | 2.2E-13 | 137 | 185 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.39E-28 | 137 | 191 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 140 | 155 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEEVWKEINL ASLHDNSSSR EGLNPHNPHF ILQDFLARPF SKEPPTNRVS ANGDTTFLDS 60 PPPPPPATLL SLNSGPGFDF LDNSCPLRSK PRLQMQNNPI SDLSNMNCPF DALASPSGLA 120 CFDKKRFQDP DNNSGDRRHK RMIKNRESAA RSRARKQAYT NELELEVAHL MEENARLKRQ 180 QEQLRVAAAT PLSRKRTLQR TSTAPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629036.1 | 1e-151 | PREDICTED: protein FD, partial | ||||
Swissprot | Q84JK2 | 2e-66 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A1U8PEJ3 | 1e-149 | A0A1U8PEJ3_GOSHI; protein FD-like | ||||
STRING | Gorai.007G191800.1 | 1e-135 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 2e-63 | bZIP family protein |