PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21044_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 381aa    MW: 43587 Da    PI: 6.5697
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21044_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.51.5e-2772153286
                    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                 W ++e++ Li++rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s +++y+++
  Cotton_A_21044_BGI-A2_v1.0  72 WVQDETRSLIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKE 151
                                 ********************************************************************84...556899***9 PP

                    trihelix  85 le 86 
                                 +e
  Cotton_A_21044_BGI-A2_v1.0 152 IE 153
                                 97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-462133IPR009057Homeodomain-like
PROSITE profilePS500908.40964128IPR017877Myb-like domain
SMARTSM007171.8E-468130IPR001005SANT/Myb domain
CDDcd122031.62E-2970135No hitNo description
PfamPF138372.8E-2171155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MYLSEKPRSI DLYKEEGPAT ASDMIIEVTT NGDLPPHHHH HPPPPQQQQI ILGESSCEDP  60
EVKAPKKRAE TWVQDETRSL IAFRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC  120
TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KNAYKSPTPP PKVDSYMHFA  180
DKGFEDAGMS FGPVEASCRP ILNLERRLDH EGHPLAVAAA DAVAASGVPP WNWRETPGNG  240
VDCQAYGGRV ITVKFGEYTR RIGIDGSADA IRDAIKSAFR LRTKRAFLLE DEDHIVHSLD  300
REMPLGNYTL HLDEGLPIKV CLYDESDHIP VHTEEKIFYV EDDYREYLLR RGYTGLREIN  360
GYRNVDNLDD LRTNAIYRGV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-5266151186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU8964131e-52KU896413.1 Hibiscus cannabinus microsatellite HC_ES_37_CTC sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637912.10.0PREDICTED: trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A0D2T7360.0A0A0D2T736_GOSRA; Uncharacterized protein
STRINGGorai.008G163200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]