PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18922_BGI-A2_v1.0 | ||||||||
Common Name | F383_33285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 496aa MW: 53840.4 Da PI: 9.2614 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cotton_A_18922_BGI-A2_v1.0 85 FVCEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00037 | 161 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Cotton_A_18922_BGI-A2_v1.0 161 WKCDKCSKRYAVQSDWKAHSKTC 183 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 84 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.81E-7 | 84 | 107 | No hit | No description |
Pfam | PF12171 | 7.9E-5 | 85 | 107 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 85 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 89 | 126 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 149 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.81E-7 | 156 | 181 | No hit | No description |
SMART | SM00355 | 140 | 161 | 181 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MMKGYIVHHQ QQEVMEENMS NLTCASGEAS VSSAAGGTNY SQQYFSNPPA QAQPVKRKRN 60 QPGNPDPDAE VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSKE 120 VRKKVYVCPE VSCVHHDPSR ALGDLTGIKK HFYRKHGEKK WKCDKCSKRY AVQSDWKAHS 180 KTCGSKEYRC DCGTLFSRRD SFITHRAFCD ALAEESSRAA IMGANTFQPG SSHTNLQVPQ 240 FNPHDIQAFS LKQEQHQRFT PLKPDIPPWL ATQPMLGAGA GLSSSSSSIF SPSLTLHENP 300 TPIPTLDPTL PPYHPTTVLS PHMSATALLQ KAAQMGATLS NKPGSSSAPA TTTAMRPHLQ 360 THVSADFVAS TNNNSTTAGF GLNVSSREEV SMGSGFIHGS THHAAESSGA PPPPSLLLQG 420 MMNSLSSPIG FDSTSFDDIA FSGILNAKNK SGTLINESFS KTTAAPKNGT GNNNDHESRA 480 GGSTQGEALR RDFLAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 157 | 225 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 157 | 225 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 123 | KLKQRTSKEVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM465183 | 1e-124 | AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017631429.1 | 0.0 | PREDICTED: protein indeterminate-domain 7-like isoform X1 | ||||
Swissprot | Q8H1F5 | 1e-125 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A0B0N629 | 0.0 | A0A0B0N629_GOSAR; Zinc finger MAGPIE-like protein | ||||
STRING | Gorai.011G064700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-118 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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