PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18768_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9828.74 Da PI: 6.5263 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + + +W ++a+ +g +t+++++ ++ Cotton_A_18768_BGI-A2_v1.0 15 YWTPKQNKLFEKALAVYDRDtpdRWQKVAAAVG-DKTPEEVRRHY 58 5*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.321 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 4.4E-7 | 12 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-7 | 15 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.93E-13 | 16 | 69 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.17E-7 | 16 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MSSSSRTSSR DSNSYWTPKQ NKLFEKALAV YDRDTPDRWQ KVAAAVGDKT PEEVRRHYEI 60 LVTDVNHIES GQIPIPDYES TGNNSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-31 | 8 | 86 | 3 | 81 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016752915.1 | 1e-58 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_017603411.1 | 1e-58 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 2e-31 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A1U8PP13 | 3e-57 | A0A1U8PP13_GOSHI; protein RADIALIS-like 3 | ||||
TrEMBL | A0A2P5W7V0 | 3e-57 | A0A2P5W7V0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G273000.1 | 1e-57 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-31 | RAD-like 6 |
Publications ? help Back to Top | |||
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