PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18421_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 724aa    MW: 79563.1 Da    PI: 5.8618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18421_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.25.1e-923647233374
                        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 elL ++Ae v +g+++ a+ +Larl+++ sp g+p+qR+a+y+ +AL+  +++   + ++  pp++ ++ +++ +l a+k+fs
  Cotton_A_18421_BGI-A2_v1.0 364 ELLHKAAELVGTGNFAHARGILARLNHQLSPVGKPFQRAAFYIRKALQLLITN---NSVSPPPPKSPTRFDVIFKLLAYKVFS 443
                                 7999************************************************9...445566777777788************ PP

                        GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                                 evsP+++f ++t Nqa+lea++ +er+Hi Dfdi+ G+QW++++q+L  R +g   lRiT+++sp +++  el  ++e L  f
  Cotton_A_18421_BGI-A2_v1.0 444 EVSPFIQFVNFTSNQALLEALDDAERIHIMDFDIGCGAQWASFMQELPMRIRGVRALRITAFASPLTHHPIELGLMRESLMLF 526
                                 *********************************************************************************** PP

                        GRAS 169 Aeelgvpfefnvlvakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                 A+e+g++fe  vl  ++l++   +l  +r++++Ea+aVn+ +   +  +++ +l++    +L++vk+lsPk+vv  +   d+n
  Cotton_A_18421_BGI-A2_v1.0 527 ANEIGLSFELVVLNFDSLDQApySLPLFRTNQNEAVAVNFPV--WSSSNQPSALPN----LLRFVKQLSPKIVVSLDGGWDRN 603
                                 ************98888888744566679999********99..444455666666....*********************** PP

                        GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                 + +F e ++ a++ y  +f+sl+a+   +s+  +k+Er+l+ ++i++ v  + ++     e++  W+  l ++GF+pv++s++
  Cotton_A_18421_BGI-A2_v1.0 604 DLPFPELVTCAFQSYKNIFESLDAG-NVTSDVVNKIERFLIVPRIESTVLGRLRA----PENMPLWKTLLCSSGFTPVTFSNF 681
                                 **********************888.6899********************99998....9*********************** PP

                        GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 + +qa++++++ +++g++ve+++ slvl+W++r+L+s+SaWr
  Cotton_A_18421_BGI-A2_v1.0 682 TITQADCVVKRAQVRGFHVEKRQPSLVLCWQQRELISASAWR 723
                                 *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.866336703IPR005202Transcription factor GRAS
PfamPF035141.8E-89364723IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MQFQLQVNGA VELPGFGSIC QQDKWIKQQE GVANGFYYNN EQEPTSVLHM RRSQSPPTSA  60
STPTSSFNGG AGGGNSTENT TNTAATIAPP NNKEEWATEL RQIPSEIDLV PEHEGTQRCN  120
IGLGDWETLL SESAVSPGQD HSLLRWIAGD AGDHSFGIKQ LLQSGSTGPN QGHDFDGNAG  180
SWVVDPSPGF EPIGSLATSG NVLSSAAPIL GGFPDSGFVP NPNNNDNGKV GVATPSCSSV  240
EGVNNHKVLG ATVGLDISIQ DIISASPDNS IGLPVTLPTL YQQQQQDLEK PQILMGRQRH  300
QQRPQNPNFS FPLPQEQDLL EPLPKRLNAG NLEFSSQIPK LAGHELFIRK QLQQHMVAEE  360
EVLELLHKAA ELVGTGNFAH ARGILARLNH QLSPVGKPFQ RAAFYIRKAL QLLITNNSVS  420
PPPPKSPTRF DVIFKLLAYK VFSEVSPFIQ FVNFTSNQAL LEALDDAERI HIMDFDIGCG  480
AQWASFMQEL PMRIRGVRAL RITAFASPLT HHPIELGLMR ESLMLFANEI GLSFELVVLN  540
FDSLDQAPYS LPLFRTNQNE AVAVNFPVWS SSNQPSALPN LLRFVKQLSP KIVVSLDGGW  600
DRNDLPFPEL VTCAFQSYKN IFESLDAGNV TSDVVNKIER FLIVPRIEST VLGRLRAPEN  660
MPLWKTLLCS SGFTPVTFSN FTITQADCVV KRAQVRGFHV EKRQPSLVLC WQQRELISAS  720
AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3438572326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2361120.0KP236112.1 Gossypium hirsutum LOM-like transcription factor (LOM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623706.10.0PREDICTED: scarecrow-like protein 27
SwissprotO813161e-103SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2P5YPP90.0A0A2P5YPP9_GOSBA; Uncharacterized protein
STRINGGorai.004G200600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16534813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-104GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]