PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18134_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 229aa    MW: 26434.8 Da    PI: 4.9474
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18134_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-17550348
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +WT+eEd+ll+++++++G g W++++   g++R++k+c++rw++yl
  Cotton_A_18134_BGI-A2_v1.0  5 AWTEEEDQLLKKCIERYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                                7*******************************************97 PP
2Myb_DNA-binding25.53.1e-0869922347
                                -HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                                 W++Ia +++ gRt++++k++w+ +
  Cotton_A_18134_BGI-A2_v1.0 69 KWSLIAGRLP-GRTANDVKNYWNCH 92
                                4*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.59154IPR017930Myb domain
SMARTSM007172.8E-14252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-21557IPR009057Homeodomain-like
SuperFamilySSF466893.56E-23592IPR009057Homeodomain-like
PfamPF002496.8E-16550IPR001005SANT/Myb domain
CDDcd001671.27E-11550No hitNo description
PROSITE profilePS512949.7795597IPR017930Myb domain
SMARTSM007170.00445595IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-145897IPR009057Homeodomain-like
PfamPF002491.2E-56990IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGGVAWTEEE DQLLKKCIER YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGTFA  60
EDEVQLIIKW SLIAGRLPGR TANDVKNYWN CHLSKKLNNA QETEEEYQNG MKMETLKPQP  120
RCSAMTGSIK PRTQDHFAPK NQPTIQESTM PTPFNFAEVD KQQGHEIVKE EEDIKEEAAV  180
GVFFGDLATE DHQFGQLDEV NVLSSTNEGC SKWDWDDLML DMDLWTDSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1569810109B-MYB
1gv2_A2e-156977105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-1511064159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-1511064159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-156977105C-Myb DNA-Binding Domain
1msf_C3e-156977105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4695830.0KC469583.1 Gossypium hirsutum clone 2 R2R3 MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630186.11e-157PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV93e-49MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2P5WFU41e-154A0A2P5WFU4_GOSBA; Uncharacterized protein
STRINGGorai.007G268800.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17352611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-51myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]