PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_17293_BGI-A2_v1.0 | ||||||||
Common Name | F383_24551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 31272.5 Da PI: 6.9186 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.9e-10 | 109 | 152 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N+++ Lr+++Pk + K++ +iL +++Y k+L Cotton_A_17293_BGI-A2_v1.0 109 LMAERRRRKRLNDRLLMLRSIVPKiS------KMDRTSILGDTIDYTKEL 152 589*********************66......**************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.205 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.2E-14 | 106 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-11 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-8 | 109 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 110 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00141 | 198 | 238 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MSGIFSNGTW NFDDHKPSST FLPLPFHQDY TYNFNPIYCP FVDEFSSQSN TFDTPSFPLQ 60 QQHDDQESRF LVHQLHKLDV KATCKTEPVQ SPHPDNPAKK LERQPSKNLM AERRRRKRLN 120 DRLLMLRSIV PKISKMDRTS ILGDTIDYTK ELLERIKSLQ QEVEAGSNMD HIFKGEKPNE 180 MIVRNTPKFE VERRNGDTRI EICCRGDPGL LLSTVSTMEA SGLEIQQCVI SCFNDFAMHA 240 SCSEDLEQTT LMKCEDIKKA LFRNAGYGGR CV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 118 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605555.1 | 0.0 | PREDICTED: transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 3e-71 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0B0MQ38 | 0.0 | A0A0B0MQ38_GOSAR; Transcription factor bHLH93-like protein | ||||
STRING | Gorai.002G137900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24642 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 4e-66 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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