PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_16994_BGI-A2_v1.0

Common Name

F383_19269

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 445aa MW: 49004.1 Da PI: 9.2077

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_16994_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Cotton_A_16994_BGI-A2_v1.0 78 FVCEVCNKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	11.4	0.001	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Cotton_A_16994_BGI-A2_v1.0 153 WKCEKCSKIYAVQSDWKAHSKIC 175 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.2E-6	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.27E-6	77	100	No hit	No description
Pfam	PF12171	8.3E-5	78	100	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.021	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	78	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.2E-4	141	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.27E-6	148	173	No hit	No description
SMART	SM00355	170	153	173	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MFPAAISNST SLSEEASVSS ITRVQDLGSL NSIVSTISPH QSPLQKVVKK KRNLPGNPDP 60 DSEVIALSPK TLLSTNRFVC EVCNKGFQRD QNLQLHRRGH NLPWKLKQRS KEMKKKVYVC 120 PEPTCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK IYAVQSDWKA HSKICGTREY 180 RCDCGTLFSR KDSFITHRAF CDALAEESAR FSASNLPSAA AAAAFSAANP RPSLHYFPSQ 240 SNCNPSSLFP FQTHISFQPW PEPTQTCNPN PNNNPLHIKP QSQHFVPLFQ EQTPPPPKAC 300 ITSPYQNLLP VGNNTSSNVA MSATALLQKA ATVGVTSTKI NNNNNNNNSN MASYVSSDML 360 GFGGGNMAAA WQKSSNHFTR DFLGLTGDQH QHHGSGNGNA NVSMNMREVL TYAGGVELQQ 420 FERDQSLLKP QGSGFDEPAS ETWGD

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MFPAAISNST SLSEEASVSS ITRVQDLGSL NSIVSTISPH QSPLQKVVKK KRNLPGNPDP  60
DSEVIALSPK TLLSTNRFVC EVCNKGFQRD QNLQLHRRGH NLPWKLKQRS KEMKKKVYVC  120
PEPTCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK IYAVQSDWKA HSKICGTREY  180
RCDCGTLFSR KDSFITHRAF CDALAEESAR FSASNLPSAA AAAAFSAANP RPSLHYFPSQ  240
SNCNPSSLFP FQTHISFQPW PEPTQTCNPN PNNNPLHIKP QSQHFVPLFQ EQTPPPPKAC  300
ITSPYQNLLP VGNNTSSNVA MSATALLQKA ATVGVTSTKI NNNNNNNNSN MASYVSSDML  360
GFGGGNMAAA WQKSSNHFTR DFLGLTGDQH QHHGSGNGNA NVSMNMREVL TYAGGVELQQ  420
FERDQSLLKP QGSGFDEPAS ETWGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	149	213	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-35	149	213	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625475.1	0.0	PREDICTED: protein indeterminate-domain 12-like
Swissprot	O22759	1e-122	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A0B0MH91	0.0	A0A0B0MH91_GOSAR; Zinc finger MAGPIE-like protein
STRING	Gorai.004G076800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-119	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]