PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_15677_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 985aa MW: 109049 Da PI: 6.032 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.2 | 1.8e-41 | 154 | 231 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adl++ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+++ Cotton_A_15677_BGI-A2_v1.0 154 VCQVEDCGADLTNAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDDGKRSCRRRLAGHNKRRRKTNP 231 6**************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.6E-34 | 148 | 216 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.129 | 152 | 229 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-38 | 153 | 234 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.3E-30 | 155 | 228 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 1.2E-5 | 727 | 872 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.8E-6 | 755 | 870 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.43E-6 | 758 | 869 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 985 aa Download sequence Send to blast |
MEARFGSEAH HFYGMSPADL RAVGKRTVEW DLNDWKWDGD LFIASSINPI SADTMGRQFF 60 PLGSGIPGNS SNSSSSCSDE LNPKAQKGKR ELEKKRRVTV VEDDSLNEET GSLTLKLGGQ 120 GDHGYPISQG EMKNWEGTSG KKTKLNGGSG NRAVCQVEDC GADLTNAKDY HRRHKVCEMH 180 SKASKALVGN VMQRFCQQCS RFHVLQEFDD GKRSCRRRLA GHNKRRRKTN PATVVNGNSL 240 NDEQTSGYLL LSLLKILSNM HSNRSDQTTD QDVLPQLLQS LANHTNEQGG RNISGLLPEP 300 KGSEAGSALF LNGEGPPRPF RQHITEAASE IPQKGVHSHD ARVTNVQGNA AGSVKMNNFD 360 LNDTYIDSDY GADDIEGFPA PVNMGTSSLD CPSWVQQDSH QSSPPQTSGN SDSVSAQSPS 420 SSSGDTQSRT DRIVFKLFGK EPNDFPLLLR AQILDWLSHS PTDIESYIRP GCVVLTIYLC 480 QSEAAWDELC CDLSFSLNQL LDCSDDTFWR TGWICTRVQD QIAFIYKGQV VVDTSLPLGS 540 NDSSKIISVK PIALCSTERA KFSVKGVNMS RPATRLLCAV EGKYLVQEAT HELMDDNDEF 600 KAQDELQYLN FSCSIPTVSG RGFIEIEDDG YNSSFFPFIV AEDDVCSEIR MLESLLEITD 660 AEAAVDRTGK MEAKNQAMDF IHEVGWLLHR SQLKSRLGDL DPNSEPFSLR RFKWLMEFSM 720 DHEWCAVVKK LLNVLLDGVV GSGEHPSLNL ALTEMGLLHR AVRKNCRPLV ELLLRFIPEK 780 GSSRLGLENE MVAGGIHESF LFRPDALGPS GLTPLHIAAG KDDSEDVLDA LTDDPGKVGI 840 DAWKSARDST GSTPEDYARL RGHYSYIHLV QKKINKRHSE HVVVDVPGPL SDCSTNRKQN 900 NESTSGFEIG QLELRSMKRH CKLCDQKLAY AYGTASRSLA YRPAMLSMVA IAAVCVCVAL 960 LFKSCPEVLY VFRPFRWELL DYGTS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-31 | 146 | 228 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ622325 | 0.0 | KJ622325.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630761.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9SMX9 | 0.0 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A1U8L8S4 | 0.0 | A0A1U8L8S4_GOSHI; squamosa promoter-binding-like protein 1 | ||||
STRING | Gorai.007G116100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3030 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|