PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14508_BGI-A2_v1.0
Common NameF383_16593
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 323aa    MW: 35891.9 Da    PI: 6.3755
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14508_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35131042102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 F+ k+y++++d+++++li+w + +nsf+v+d+ +f++++Lp yFkhsnf+SFvRQLn+YgF+kv++++         weF+++
  Cotton_A_14508_BGI-A2_v1.0  13 FVAKTYQMVNDPATDDLITWGKANNSFIVIDPLDFSHNILPFYFKHSNFTSFVRQLNTYGFRKVDSDK---------WEFANE 86 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                 +F +g+k+ll+++ rkk+
  Cotton_A_14508_BGI-A2_v1.0  87 WFLRGQKHLLKNVVRKKT 104
                                 ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-36797IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-529102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-3210102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEAANCSDVV SPFVAKTYQM VNDPATDDLI TWGKANNSFI VIDPLDFSHN ILPFYFKHSN  60
FTSFVRQLNT YGFRKVDSDK WEFANEWFLR GQKHLLKNVV RKKTGGNRCV RLKKGEVLDG  120
GVDGDGEIVM EIARMKEEQK WLEEELKGMN ERLETTERRP MQVVAFLRQV VEDPGFVSCL  180
VLEKQRSRRI MLEKRRLKVV PPLAVSNNPV KSEGEGWHAE LISSSSSPSP SPEDSMVVLE  240
RRDTVGQAMN NGCGTITSQS PVVVPLVNGN STTVFSSGMS SLVGYGDGNG QLHYLGDMAE  300
VAGGMVEARV SLPYPFSLFG GGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24310420131Heat shock factor protein 1
5d5v_B2e-24310420131Heat shock factor protein 1
5d5v_D2e-24310420131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486140.0KJ748614.1 Gossypium hirsutum HSF11 (HSF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625428.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV527e-74HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0B0NP490.0A0A0B0NP49_GOSAR; Heat stress transcription factor C-1-like protein
STRINGGorai.004G280100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2456634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-63heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]