PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14367_BGI-A2_v1.0 | ||||||||
Common Name | F383_22799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 381aa MW: 41264.2 Da PI: 6.8054 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.3 | 6.9e-23 | 262 | 324 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+ Cotton_A_14367_BGI-A2_v1.0 262 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 324 89*******************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.0E-33 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.7E-18 | 122 | 241 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-18 | 256 | 321 | No hit | No description |
Pfam | PF00170 | 1.3E-20 | 262 | 324 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.4E-21 | 262 | 326 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.128 | 264 | 327 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.25E-11 | 265 | 318 | No hit | No description |
CDD | cd14702 | 1.37E-22 | 267 | 316 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 269 | 284 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGNNDEGKSS KSDKSSSPVP TDQNNIHVYP DWAAMQAYYG PHVNMPPYYS SAVASGHAPP 60 AYMWGLTQPM MPPYGAPYAT IYSHGGVFAH PAVPLVLDIT SSILMQAAGP VETPVKSPGN 120 TEQGLMKKLK GFDGLAISIG NGTAKNAEGR AKPRPSHSVE TAGSTDGSDG NTTGTDQSRW 180 KRSREGTPTL VEDEKIEAKS YQVAAGEVTA TISPKPIGTV VSPGMTTGTI LELRNTPNKN 240 AMSSAMGVHC GVMPTEVWLQ NERELKRERR KQSNRESARR SRLRKQAETE ELARKVESLT 300 SENAALRSEI NQLTEMSEKV RLENAILVEE LKNAQLGHGQ ENVLNKKEDK EDEMCEKKSD 360 SGAKLHQLLD PSPRDDVVAA G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 284 | RRSRLRK |
2 | 278 | 285 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017627587.1 | 0.0 | PREDICTED: G-box-binding factor 3-like isoform X3 | ||||
Swissprot | P42776 | 1e-118 | GBF3_ARATH; G-box-binding factor 3 | ||||
TrEMBL | A0A0B0NYG1 | 0.0 | A0A0B0NYG1_GOSAR; Common plant regulatory factor 1 | ||||
STRING | Gorai.007G105100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-101 | G-box binding factor 3 |
Publications ? help Back to Top | |||
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