PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13405_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 439aa MW: 47813.4 Da PI: 8.2974

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13405_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.3e-40	84	144	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Cotton_A_13405_BGI-A2_v1.0 84 PDQILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 144 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	77	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	85	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MFFRTLIIFI LDSLAEQIAD TGQEDDNIQP SNREESTNPE TSPEPNVNPK TPSIDEETGK 60 SKTGKTDKEQ SDGSKSQEKT LKKPDQILPC PRCNSMDTKF CYYNNYNINQ PRHFCKACQR 120 YWTAGGTMRN VPVGAGRRKN KNSASHYRHI SISEALQAAR IDAPNAAHHP ALKSNGRVLS 180 FGLDAPICDS MASVLNLGEK KVLNGARNGF HGLEEQRVSV PNRRENGDDC SSGSSITVSN 240 SMEEGGRSCI QENRMGNING FPSPIPCLPG VPWPYPWNST VPPPAFCPSG FPMSFYPAAA 300 YWNCGIPGTW NVPWLSPQSS STSSNHKAPT SGPNSPTLGK HSREGDMAKL DDSEKQKATK 360 QKNGCVLVPK TLRIDDPSEA AKSSIWATLG IKNESLSGGG LFKAFHPKSD EKNHVAEASP 420 VLRANPAALS RSLNFHESS

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MFFRTLIIFI LDSLAEQIAD TGQEDDNIQP SNREESTNPE TSPEPNVNPK TPSIDEETGK  60
SKTGKTDKEQ SDGSKSQEKT LKKPDQILPC PRCNSMDTKF CYYNNYNINQ PRHFCKACQR  120
YWTAGGTMRN VPVGAGRRKN KNSASHYRHI SISEALQAAR IDAPNAAHHP ALKSNGRVLS  180
FGLDAPICDS MASVLNLGEK KVLNGARNGF HGLEEQRVSV PNRRENGDDC SSGSSITVSN  240
SMEEGGRSCI QENRMGNING FPSPIPCLPG VPWPYPWNST VPPPAFCPSG FPMSFYPAAA  300
YWNCGIPGTW NVPWLSPQSS STSSNHKAPT SGPNSPTLGK HSREGDMAKL DDSEKQKATK  360
QKNGCVLVPK TLRIDDPSEA AKSSIWATLG IKNESLSGGG LFKAFHPKSD EKNHVAEASP  420
VLRANPAALS RSLNFHESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017634268.1	0.0	PREDICTED: cyclic dof factor 3 isoform X1
Refseq	XP_017634269.1	0.0	PREDICTED: cyclic dof factor 3 isoform X2
Swissprot	Q8LFV3	1e-127	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0D2U601	0.0	A0A0D2U601_GOSRA; Uncharacterized protein
STRING	Gorai.008G193700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-126	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]