PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11915_BGI-A2_v1.0
Common NameF383_02578
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 681aa    MW: 74381.1 Da    PI: 5.1284
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11915_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.72.7e-28227281155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 kpr++W+ +LH++Fv av+qLG  ++A+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Cotton_A_11915_BGI-A2_v1.0 227 KPRVVWSVDLHRKFVAAVNQLGLGDQAVPKKILDLMNVEGLTRENVASHLQKYRL 281
                                 79****************************************************8 PP
2Response_reg61.35.1e-216615223109
                                 CEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS-- CS
                Response_reg  23 yeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfd 103
                                 y + +++ ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + +  Ga d+l Kp+ 
  Cotton_A_11915_BGI-A2_v1.0  66 Y-NFTTTNQAIIALKMLRENKnrYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHGACDYLLKPVR 146
                                 4.778888889999999877778*******************87754.558******************************** PP

                                 HHHHHH CS
                Response_reg 104 peelvk 109
                                 +eel +
  Cotton_A_11915_BGI-A2_v1.0 147 IEELKN 152
                                 ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-3723165No hitNo description
SuperFamilySSF521727.26E-2923164IPR011006CheY-like superfamily
SMARTSM004484.2E-2124154IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.93925158IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.31E-2327157No hitNo description
PIRSFPIRSF0363924.2E-14163681IPR017053Response regulator B-type, plant
PfamPF000726.5E-1866152IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.1E-37199210No hitNo description
SuperFamilySSF466891.68E-18224285IPR009057Homeodomain-like
PROSITE profilePS5129410.685224284IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-30225286IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-25227281IPR006447Myb domain, plants
PfamPF002493.7E-7229280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
ITMEEKMGGS NGEDSGEDQF PVGMRVLAVD DDPICLKILA NLLCKCQYQA KYVCPALQCS  60
FDLDLYNFTT TNQAIIALKM LRENKNRYDL VISDVNMPDM DGFKLLELVG LEMDLPVIML  120
SAHSDTKLVM KGITHGACDY LLKPVRIEEL KNIWQHVVRR KKPDSKDELA APNHDKARGG  180
TGEAGQTWVA CSSDQKVNKK RKDQSEDEEE ETEDNGRENE DSSCQKKPRV VWSVDLHRKF  240
VAAVNQLGLG DQAVPKKILD LMNVEGLTRE NVASHLQKYR LYLRRLSSVA TQQANMIVAL  300
GSRGPSHLRT GSLDGFGDFR SFTGPGRFSS ASLPSYQSRG TFGRLNSSAA LTLSGISSGV  360
IQPGNSVNGL GKIQPVVLPA NQNQNGVLFQ GITASIELNQ LSQTKSTNHF GEYNCVDERN  420
VFRISSSFPD ARVVVGSSSN SLSTASGNAL VLQGNTQQVQ CSAAFENLPS FGMTSLNRES  480
NDLSVRGSSN CLEHGRCSEN WQGTVQLSNF PPSNEQLPSN NLQESIPWRN SSPSNGCIAL  540
SSMASSAFLG DSRADMLCKA GLNNSYSHVD SRVSASGSMM DQSNAVSSNT NDVSLFSHLN  600
GEAPFAVWLS EGDKSSFDTD LRSNDNFLFL QSKPQNGFSQ NNFESLEDIM SPVFKLEQNN  660
ETAFMDGGFG FDVAYPLGSC M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22223287164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625572.10.0PREDICTED: two-component response regulator ARR12-like
SwissprotA2X1N21e-123ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-123ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0B0PCY20.0A0A0B0PCY2_GOSAR; Two-component response regulator
STRINGGorai.004G291100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-115response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]