PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10368_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 349aa    MW: 41082.8 Da    PI: 4.2499
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10368_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.81.2e-1299183286
                    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                 Wt+qe+ +L+e+  ++  +l+r++l++ +W ++++k+  + +  ++  qC+  ++ l++++kk+k  +++    +ss++++f+
  Cotton_A_10368_BGI-A2_v1.0  99 WTQQEIYVLLEVWGNRFLQLGRRSLRGEDWVDIAEKVsDALKSVKNEAQCRRMIDGLKRKFKKEKSKAERM-GLNSSKWVFFR 180
                                 *************************************6667778899*******************99986.89999****** PP

                    trihelix  84 qle 86 
                                 ++e
  Cotton_A_10368_BGI-A2_v1.0 181 KME 183
                                 **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-1598184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDGIEPYSFN RHPQYPRSTR TRHVYSYGPD EELDDEEEME LDNEDVDDDN DDDPDVYYHR  60
VKESERFERY PKRQKVRTSV PSFQYAPDHR DSLKNAYDWT QQEIYVLLEV WGNRFLQLGR  120
RSLRGEDWVD IAEKVSDALK SVKNEAQCRR MIDGLKRKFK KEKSKAERMG LNSSKWVFFR  180
KMEMLMGLGS SSFRQQESWL ACGVDSGEFV FMNPQVYLDR SNGFDEMRDS PAESEIDDDD  240
DGEEADGGSM KVDVNDEHSL RMLAESVQRF SKIYEKIESS KREHMKELEK MRMDFQKELE  300
VQKKQILEKA QAEIAKMKEE DDDDDDDDDE TDDDDDGDDN GDSTENISE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9645521e-95JX964552.1 Gossypium hirsutum clone NBRI_TRANS-821 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718080.10.0PREDICTED: trihelix transcription factor ASIL1-like isoform X1
RefseqXP_017606774.10.0PREDICTED: trihelix transcription factor ASIL1 isoform X1
TrEMBLA0A1U8LU280.0A0A1U8LU28_GOSHI; trihelix transcription factor ASIL1-like isoform X1
STRINGGorai.001G004200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-82Trihelix family protein