PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_09361_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 489aa MW: 54571.6 Da PI: 9.2076 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.8e-10 | 315 | 359 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N++f+ Lr+llP+ +K + +++L + eY+ sL Cotton_A_09361_BGI-A2_v1.0 315 HMLSERKRREKLNESFDALRSLLPPG-----TKKDRVSVLASTREYLTSL 359 6778********************97.....79999**********9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.488 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.92E-11 | 312 | 363 | No hit | No description |
SuperFamily | SSF47459 | 8.51E-15 | 313 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-13 | 314 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-8 | 315 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-12 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MDAVFLLDGA ARSGFLQFLM QSTGCTYICL WSYSSSLHQP KGLVPGFAFR NYRPYIELGE 60 LELQSRASHQ TQRQFYREAR IKTAVFMGCK SGEIELGSPN AVNLNMEMEM RTFFPEDFSR 120 QSLVAVSEPT DPNNPSSSSS SLRSLATDSP DSYLIFTVPN ASRPQVPTGS ETTPSLLQAK 180 PASSSMYDPH QQAMQQALSE MRSNINLPSL ESENAAMTRA ILAVLTSPSS SSSSTSQYHS 240 QQSHNLPPSY QPNSKATAFK RYGSPLGTPT TAAVRASLRA QSMLKRAILF YRRFNLVRSE 300 QQPRRRAPTV HQLHHMLSER KRREKLNESF DALRSLLPPG TKKDRVSVLA STREYLTSLK 360 SQIMELNRQN QLLEAAQASA TSADEANGSS NERLNIRIIP VPESTSEQRI IELRVSVGGE 420 VSIVDILIQL LQFLKLDRNI SLMSTEANTR TAELGSINHV NLRFRIEGDD WDESTFQEAV 480 RRILADLAQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 303 | 322 | RRRAPTVHQLHHMLSERKRR |
2 | 318 | 323 | ERKRRE |
3 | 319 | 324 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644366.1 | 0.0 | PREDICTED: putative transcription factor bHLH041 | ||||
TrEMBL | A0A1U8MKW2 | 0.0 | A0A1U8MKW2_GOSHI; putative transcription factor bHLH041 | ||||
STRING | Gorai.009G031900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7060 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 1e-63 | bHLH family protein |