PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09215_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 92aa    MW: 10419.7 Da    PI: 8.5359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09215_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81e-0920601454
                                HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                         HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                d+iN+  ++L +llP+ + + +s K+s a +L+++++YI+sL
  Cotton_A_09215_BGI-A2_v1.0 20 DQINDLVSKLHQLLPEiR-NSHSDKVSAAKVLQETCNYIRSL 60
                                79**************77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.414660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-92079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-72060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-102078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRSRQ SASNSRITDD QINDLVSKLH QLLPEIRNSH SDKVSAAKVL QETCNYIRSL  60
HREVDDLSER LSELLATTDN AQAAVIRSLL MQ
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488175.17e-59PREDICTED: transcription factor PRE3-like
RefseqXP_016694623.17e-59PREDICTED: transcription factor PRE3-like
RefseqXP_017618836.17e-59PREDICTED: transcription factor PRE3-like
SwissprotF4JCN91e-37PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A0D2T6262e-57A0A0D2T626_GOSRA; Uncharacterized protein
TrEMBLA0A1U8K0X32e-57A0A1U8K0X3_GOSHI; transcription factor PRE3-like
TrEMBLA0A2P5R3X62e-57A0A2P5R3X6_GOSBA; Uncharacterized protein
STRINGGorai.007G036200.13e-58(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.12e-37activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]