PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08820_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 286aa    MW: 32620.4 Da    PI: 8.1306
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08820_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13109156355
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Cotton_A_08820_BGI-A2_v1.0 109 KDHIMAERKRREKLSEKFIALSALVPGL-----KKMDKATVLGDAIKYMKQLQ 156
                                 6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.183106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10109156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-19110168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-13111160No hitNo description
SuperFamilySSF474598.9E-18111173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MENPNIFNQW RIDELSVLPV PVPVSASFGD NSQHYEASSS RPATIDRPQK QLKITNGRNS  60
CRTHILTDIQ SSFSPHTLPF PSSNYNPFGN QNFLVKGYHD TNNRISQSKD HIMAERKRRE  120
KLSEKFIALS ALVPGLKKMD KATVLGDAIK YMKQLQEKVK TLEEQARQKS IESVVFVKKY  180
QLLGDINDEL SSWDEICAPF DEPLPEIEAR FCDQSVLISI HCEKRKGFPE KIISSIEKFN  240
LTVINSNVMT FGSCAHITIV AQMDMEFCMT VKELVKNLRS SYIFLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13110168866Transcription factor MYC2
5gnj_B7e-13110168866Transcription factor MYC2
5gnj_E7e-13110168866Transcription factor MYC2
5gnj_F7e-13110168866Transcription factor MYC2
5gnj_G7e-13110168866Transcription factor MYC2
5gnj_I7e-13110168866Transcription factor MYC2
5gnj_M7e-13110168866Transcription factor MYC2
5gnj_N7e-13110168866Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119ERKRRE
2115120RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6209201e-82JX620920.1 Gossypium hirsutum clone NBRI_GE67296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707360.10.0PREDICTED: transcription factor bHLH19-like
SwissprotQ9T0721e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1U8KY620.0A0A1U8KY62_GOSHI; transcription factor bHLH19-like
STRINGGorai.012G161900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-58bHLH family protein