PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_07771_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 312aa MW: 35971.5 Da PI: 8.1413 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.4e-32 | 143 | 197 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG ekAtPktil+lm+ +gLt+ hvkSHLQkYR+ Cotton_A_07771_BGI-A2_v1.0 143 KTRIRWTQDLHEKFVECVKRLGGCEKATPKTILKLMDTQGLTIFHVKSHLQKYRT 197 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 140 | 198 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.363 | 140 | 200 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-16 | 142 | 197 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-23 | 143 | 197 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.0E-9 | 147 | 196 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-19 | 225 | 271 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MNTKRTDSQE LARQSLGFNR NCNLQPAMEG VPQQLNPGSS SSNPIMSGFQ TPAYAFYATE 60 RLDTSFCPQH NIYSSIESIA QDEPNYDFRN TLQSLVKSQI CFDQYQKSFE RSYKFPGSNA 120 KTHFSVPSRG NQDQRAYCNK SNKTRIRWTQ DLHEKFVECV KRLGGCEKAT PKTILKLMDT 180 QGLTIFHVKS HLQKYRTARY MPEFTQDCNL ITMYAMCRVF GSGLHLTEAL QLQLDVQRRL 240 NEQLEFQRNL QLRIEEQGRR LKMMIDEQQK TNENLLKNQG VDIKPYEHDP SFSDLDSSIA 300 ETSENVLTSG PC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-24 | 143 | 200 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-24 | 143 | 200 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-24 | 143 | 200 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-24 | 143 | 200 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-24 | 143 | 200 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-24 | 143 | 200 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-24 | 143 | 200 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-24 | 143 | 200 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-24 | 143 | 200 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-24 | 143 | 200 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-24 | 143 | 200 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-24 | 143 | 200 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017609548.1 | 0.0 | PREDICTED: myb family transcription factor PHL5 | ||||
TrEMBL | A0A2P5WUB0 | 0.0 | A0A2P5WUB0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G142000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24434 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-58 | G2-like family protein |