PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07375_BGI-A2_v1.0

Common Name

F383_13298

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 244aa MW: 26687.3 Da PI: 6.5111

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07375_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.5	1.7e-34	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Cotton_A_07375_BGI-A2_v1.0 39 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 93 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-33	36	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.095	36	96	IPR017930	Myb domain
SuperFamily	SSF46689	1.22E-17	38	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	39	94	IPR006447	Myb domain, plants
Pfam	PF00249	6.5E-9	41	92	IPR001005	SANT/Myb domain
Pfam	PF14379	4.2E-27	137	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MYSAIRSLPL NGSVGDYQGS FDGTNLPSDA CLVLTTDPKP RLRWTAELHE RFVDAVTQLG 60 GPDKATPKTI MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE STDNSKDASC VAESLDTGSS 120 TTSSSKLVAQ DLNDGYQVTE ALRVQMEVQR RLHEQLEVQR HLQLRIEAQS KYLQTILEKA 180 CKALSDHVAA SAGLEAAREE LSELGIKISN DCQGMVPFDD IKLPSLPELP AALENKATTT 240 GMPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589523	2e-96	JX589523.1 Gossypium hirsutum clone NBRI_GE24244 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486916.1	1e-167	PREDICTED: myb family transcription factor APL-like
Swissprot	Q94A57	1e-131	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A0B0N6K8	1e-180	A0A0B0N6K8_GOSAR; Myb family transcription factor APL
STRING	Gorai.006G222400.1	1e-166	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-125	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]